Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0556 ATGGCGGCTGAGGCTCAGCTTCCTGACCACTTCAAGTGTCCGATTTCCCTGCAAATCATGTCCGACCCCGTCATCCTCTCTTCCGGCCACACCTTCGACCGCTCCTCCATCCAGCGCTGGCTGGACGCCGGCCACCGCACTTGCCCAATTACCAAACTACCCCTCCCTGCACACTCCTCCCTCATCCCCAACCACGCCCTCCGAAGCCTAATCTCCAACTACGCCCCCATCAACCCTCAACAACACCACCACCCCCAAACCCTAATCTCCTCCCTCACCTCTCTCTCCTCCCCTCTCCCCTCCAAACTCGACGCGCTCCACCACCTCACGCGCCTCTCTCACTCCGACTCCCTCTTCCGCCGCCGCCTCTTCAATTCCCCCGCCCTCGTCCCCGCCCTCTTAACCTGCCTCCAACACATCTCCGCCGACCTCCGCCATCGCGCCCTCTCCCTCCTCCTCCACCTCTCCCTCGACGACGACGCCAAGGTCGGCCTCGTCGCCGAGGGCCTCCTCTCCCCTCTCATCACTCTACTCCTCTCCGCCGCCCCCTCCGACTGCCGCGCCCTCTCCGCCACCCTTCTCACCAGCCTCGCCGTCCTCCACGTCAACAAGGCCACCATCGGAGCCTTCCCCGGCTCCATCCACGCCCTGGTCACACTCCTCCGGGACGGTAAAGGCAGAGAAAGAAAAGAAGCCGCCACCGCGCTCTACGCCCTCTGCTCCTTCCCCGACAACCGCCGTAGAGCGGTAGAGTGCAGCGCCGTTCCTGTTCTGCTTCGAAGCGCCGATTCCGGGCTTGAGAGGAGCGTTGAGGTTATTGGGGTTTTGGCGAAGTGTAAAGAGGGGAGGGAACACATGGAACGGTTTCGCGGGTGTGTGCAGATTCTTACTCGCGTGTTGAGGAATGGAAGCTCCAGAGGAGTTCAGTATGCTCTTATGGCTCTCTATTCTCTCTGTTGTCACAGTGAAGAAACTGTTGTCGAGGCTTTACGAAATGGGGTTTTGGATATTTGTCAAGGCTTGGTCGAGGATGATAATGCCAAGGTCAAGAGGAATTCGTCCTGTTTGGTTCAGCTTCTCCGTGGGAACACCCATCGCTTGAGTTAG 1107 0.5998 MAAEAQLPDHFKCPISLQIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITKLPLPAHSSLIPNHALRSLISNYAPINPQQHHHPQTLISSLTSLSSPLPSKLDALHHLTRLSHSDSLFRRRLFNSPALVPALLTCLQHISADLRHRALSLLLHLSLDDDAKVGLVAEGLLSPLITLLLSAAPSDCRALSATLLTSLAVLHVNKATIGAFPGSIHALVTLLRDGKGRERKEAATALYALCSFPDNRRRAVECSAVPVLLRSADSGLERSVEVIGVLAKCKEGREHMERFRGCVQILTRVLRNGSSRGVQYALMALYSLCCHSEETVVEALRNGVLDICQGLVEDDNAKVKRNSSCLVQLLRGNTHRLS* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0556 368 PANTHER U BOX DOMAIN-CONTAINING 1 367 - -
Gso15g0556 368 Pfam U-box domain 8 74 IPR003613 GO:0004842|GO:0016567
Gso15g0556 368 SMART Ubox_2 10 74 IPR003613 GO:0004842|GO:0016567
Gso15g0556 368 Gene3D - 91 368 IPR011989 -
Gso15g0556 368 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 367 - -
Gso15g0556 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 76 IPR013083 -
Gso15g0556 368 SUPERFAMILY RING/U-box 5 80 - -
Gso15g0556 368 CDD RING-Ubox_PUB 11 52 IPR045210 -
Gso15g0556 368 ProSiteProfiles U-box domain profile. 6 81 IPR003613 GO:0004842|GO:0016567
Gso15g0556 368 SUPERFAMILY ARM repeat 86 359 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0556 Gso-Chr15 4928477 4930397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0556 7 362 U-box Gene Family AT4G21350 56.131 1.95e-134 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0556 - - gmx:100796272 676.781