Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0553 ATGGCTGAGGAGTTTCAAGCTGCTATTTGTGGTGAAAGTTGGTGGAATATTATTAATCCAACAAGAAGTGTGTTTCCTCTTATGCCATCAACTTGTTCTGTGGCAGCAGCTGATGCAGGAAACTACAGCACTTGGCAAAGTACTACTGATTTCGTGGATTTGAAGGGAACAAGGTCTTGTGCTGAGGAGACTGATATTAACTTGGTTTCTTCTGATACTTCTCTGAGTTTTCTTGATGCCGAGAAGCCACACCAGAGCGGAACTGGTAGCATCTTGATCGATTCCACCTTACAAATGATGGGTTTTGGCATGTCATCTTCAACTTCACCGAATTGGAGTCAATCTTTATTAGGGAGCAGTTTTGATTCTGTGCTTCAAGAAGAAACAGGCATAGGTGGTGGTGGTTCTTCCAATGATTCACAAATCCAAAAGGATTGGAGTCCAAAGAATTTCTCATCTGATGGTGGCAGCGAGCAAGTTTCCACCGTTGATGCTTTCAAGCCAATGAACCAAGAATTTTCCTTGGATCAGCAGAGTCTGAATTCTGTTGTTACAAGCACTGATGGATCATTATCTGGTGGTAATTTCCCAGTTGTTTCAGCCTCCTACGGTTACCCTTCAACATTGATACAAAGCTTATATGAGCATCAACCACAACCACAGAATTCACTTTTCACCAACCCCTCCATGTCCTATGGGACATGTTCCAATGAACTGTCACCAACTTGGTCCAAAGTCTCTTCCTTTCTCAAACCCTCAATGCCAAAGCAACAGCTCCGTGGATTGCACTTTTCCAACAACACTACTCCTTTCTGGAATTCTTCAGCCGAAGCGCTTAATGACATAAGAGCAGGTGTTTTTGCTTCATCACAGGCCCAATATCAAACTCCAAAATTTGAAGAGAAACCCAACTGCCCCCATACTCTATTAAAGAAGCTCAAGAGAGAAGAATCACCAGACGCAGCGAAGAAAAATTCTCCTGAGCCTGCCGCATTCAAGAGGCAAAGAATTGAGACTCCATCTCCATTACCAACTTTTAAGGTTAGGAAAGAAAAGCTGGGGGACCGCATCACTGCTCTTCAGCAATTGGTTTCACCTTTCGGAAAGACGGACACGGCATCCGTTCTTCACGAAGCCATCGAGTACATCAAGTTCCTTCATGACCAAGTCAGTGTATTGAGGACTCCATATATGAAAAACAATGGAGCTCCCATTCAACACCAGCAGGATTGTGATAATCTGAAGGACTCAGAAGGGCCAAAGCAAGATTTGAGAAGCCGAGGGCTGTGTTTGGTGCCGGTTTCAAGCACATTCCCGGTCGCTAATGAGACCATTGTTGACTTCTGGACGCCTACATTTGGAGGCGCACTCATTGGCAAGTAG 1383 0.444 MAEEFQAAICGESWWNIINPTRSVFPLMPSTCSVAAADAGNYSTWQSTTDFVDLKGTRSCAEETDINLVSSDTSLSFLDAEKPHQSGTGSILIDSTLQMMGFGMSSSTSPNWSQSLLGSSFDSVLQEETGIGGGGSSNDSQIQKDWSPKNFSSDGGSEQVSTVDAFKPMNQEFSLDQQSLNSVVTSTDGSLSGGNFPVVSASYGYPSTLIQSLYEHQPQPQNSLFTNPSMSYGTCSNELSPTWSKVSSFLKPSMPKQQLRGLHFSNNTTPFWNSSAEALNDIRAGVFASSQAQYQTPKFEEKPNCPHTLLKKLKREESPDAAKKNSPEPAAFKRQRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVSVLRTPYMKNNGAPIQHQQDCDNLKDSEGPKQDLRSRGLCLVPVSSTFPVANETIVDFWTPTFGGALIGK* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0553 460 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 337 386 IPR011598 GO:0046983
Gso15g0553 460 Gene3D - 347 404 IPR036638 GO:0046983
Gso15g0553 460 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 347 401 IPR036638 GO:0046983
Gso15g0553 460 MobiDBLite consensus disorder prediction 131 160 - -
Gso15g0553 460 MobiDBLite consensus disorder prediction 314 341 - -
Gso15g0553 460 CDD bHLH_AtbHLH_like 343 394 IPR045239 -
Gso15g0553 460 PANTHER TRANSCRIPTION FACTOR BHLH123 48 448 - -
Gso15g0553 460 MobiDBLite consensus disorder prediction 314 331 - -
Gso15g0553 460 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 48 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0553 Gso-Chr15 4897999 4901402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0553 171 457 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 46.711 7.16e-55 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0553 - - gmx:100794682 933.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0553 15 4897999 4901402 Gso15g0553 15 4897999 4901402 ECH
Gso15g0553 15 4897999 4901402 Gso11g3029 11 46143744 46149771 GST
Gso7g1597 7 37776671 37780730 Gso15g0553 15 4897999 4901402 PCT
Gso8g0515 8 4766590 4770431 Gso15g0553 15 4897999 4901402 PCT
Gso15g0553 15 4897999 4901402 Gso7g1597 7 37776671 37780730 PCT
Gso15g0553 15 4897999 4901402 Gso8g0515 8 4766590 4770431 PCT