Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0550 ATGGAGTATCAAGATGAGGATCATTTATGTTTTACTATGGAAGAGTTTGCTCTTGCTACTGAAAATGTTAGTAGCAGGCAAAGGATGAGTAGGAAGAGGAACTATGATGATGACACAAGAGTGTACAAATCAAAGAACCTTGAGATTGAAAGGAGAAGGAGGGAGAAACTCAGTACAAGGCTTTTGATGCTGCGGTCTATAAACCCTATCATCACAAATATGAATAGAGGAACAATTATTGTAGATGCTATCACCTACATTGAGAAGCTGCAACACGAAGTCCAGCGTCTCAGCCAAGAGCTTCACCAATTGGAAGCAACTTCAGAGAAAACAGCAGAGGCAAAAGTAGATGAAATTGATGCTGTGGAGGATATGAAGCATTGGGGGATACAGGCTGAGGTCAGAGTGGCACAGATAGATGAGAATAAACTCTGGGTCAAGATCATCATTGAGAAGAAGAGGGGAAGATTCAGCAAATTAATGGAGGCCCTCAATAATTTTGGCATTGAGCTCATTGACACCAATTTTACAACCACAAAAGGTGCATTTCTGATTACAAGCTGCATACAGGTTAAGGATGGTGAAAGACTTGAAATTAATCAGAGCAAGAGTTTGTTGCAAGAGATTATCAATGACATATAA 642 0.3988 MEYQDEDHLCFTMEEFALATENVSSRQRMSRKRNYDDDTRVYKSKNLEIERRRREKLSTRLLMLRSINPIITNMNRGTIIVDAITYIEKLQHEVQRLSQELHQLEATSEKTAEAKVDEIDAVEDMKHWGIQAEVRVAQIDENKLWVKIIIEKKRGRFSKLMEALNNFGIELIDTNFTTTKGAFLITSCIQVKDGERLEINQSKSLLQEIINDI* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0550 213 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 42 106 IPR036638 GO:0046983
Gso15g0550 213 PANTHER TRANSCRIPTION FACTOR DYT1 9 213 - -
Gso15g0550 213 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 9 213 - -
Gso15g0550 213 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 41 90 IPR011598 GO:0046983
Gso15g0550 213 Pfam Helix-loop-helix DNA-binding domain 44 91 IPR011598 GO:0046983
Gso15g0550 213 SMART finulus 47 96 IPR011598 GO:0046983
Gso15g0550 213 Coils Coil 80 114 - -
Gso15g0550 213 Gene3D - 32 120 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0550 Gso-Chr15 4873243 4874773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0550 23 210 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 39.796 4.11e-44 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0550 - - gmx:100793637 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0550 15 4873243 4874773 Gso11g2746 11 43375404 43375888 GST