Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0540 ATGAGTAATAGTAATTGGGTGTTGGATTATGATTATCTAGACAACATTCCTCTCACCACCCTTGAACCACCTAATTTCTCTTGGTCTTCCTCCTCTCCTCCTCCTACACTCAGTGTGGAGCTAGATGACTCATTTGGAATTTTGGATGGTCTCAAGGAAAACAGGTCAAGAAAACGTTTGAGGCCATCTGATTCTAAAGCATGTAGAGAGAAAATGCGAAGGGATCGACTTAATGACAGGTTTATGGAACTGGGGTCTATCTTGGACCCTAGAAAGCCTCTCAAAATGGACAAGGCTGTTATATTAAGTGATGCAGTTCGAGTTGTTTCTCAGTTACGAGAGGAAGCTCAAAAGCTGAGGGAGTCCACTGAGAATCTACAAGAGAAAATCAATGCATTGAAGGATGAGAAAAATGAGCTTCGCGATGAGAAGCAGCGACTAAAAGTAGAGAAAGAAAACCTTGAGCAGAAGGTTAAAGCTTTGAGTTCACAACCTAGCTTTCTGGCTGCAGCAGGACAAGTTGTTGGCAGCAAGCTGGTGCCATTCATGGGCTACCCAGGAGTTGCCATGTGGCAGTTTTTATCACCTGCTGCTGTTGATACCTCTCAGGACCATGTTCTCAGGCCCCCAGTAGCATAA 639 0.4429 MSNSNWVLDYDYLDNIPLTTLEPPNFSWSSSSPPPTLSVELDDSFGILDGLKENRSRKRLRPSDSKACREKMRRDRLNDRFMELGSILDPRKPLKMDKAVILSDAVRVVSQLREEAQKLRESTENLQEKINALKDEKNELRDEKQRLKVEKENLEQKVKALSSQPSFLAAAGQVVGSKLVPFMGYPGVAMWQFLSPAAVDTSQDHVLRPPVA* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0540 212 SMART finulus 67 118 IPR011598 GO:0046983
Gso15g0540 212 CDD bHLH_AtILR3_like 66 141 - -
Gso15g0540 212 Coils Coil 102 164 - -
Gso15g0540 212 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 61 112 IPR011598 GO:0046983
Gso15g0540 212 Gene3D - 64 141 IPR036638 GO:0046983
Gso15g0540 212 Pfam Helix-loop-helix DNA-binding domain 65 112 IPR011598 GO:0046983
Gso15g0540 212 PANTHER BHLH TRANSCRIPTION FACTOR 3 212 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Gso15g0540 212 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 132 IPR036638 GO:0046983
Gso15g0540 212 PANTHER TRANSCRIPTION FACTOR ILR3-LIKE 3 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0540 Gso-Chr15 4823326 4826609 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0540 3 212 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 54.936 4.14e-77 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso15g0540 HLH 6.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0540 - - gmx:100790993 410.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0540 15 4823326 4826609 Gso11g3048 11 46330418 46332915 GST