Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0526 ATGTGGCTTTCTTTCTTCCATGAATTTGGTGATATTAGCTTGATAGCTTCAGCTGTTTTTCATTGCATGAGGAGTTCTCATATGGAGATTTCATCAATCAGAGGGCTACCTGAACTGGGGATAATAGAGGATCCTAACTTCCTCCATCAGTGGCAGTTAAACTCTATTGATACAACTAGCTTAAAAGGTGCTGCTTTTGGAGATATTTTGCAAAAGCACTCATTCTCTGATAACTCAAACTTCAACCCCAAAACATCCATGGAAACATCACAAACTGGAATTGAAAGATATGCAAAACAGCTCGGTGATAACAGCTGGAATCACAACAAAAGTCAACAACAGACACCAGAGACACAATTTGCTTCATGCTCAAATCTTCTTTCATTTGTTAATACGAATTACACAAGTGAATTGGGACTAGTGAAGCCTAAGGTGGAGATGGCGTGTCCTAAAATTGACAACAATGCTCTTGCAGACATGTTGATCTCTCAAGGAACCTTAGGAAATCAAAACTATATTTTCAAGGCTAACCAAGAGACCAAAAAGATTAAAACACGTCCTAAACTTTCTCAACCTCAAGACCACATAATAGCTGAAAGGAAGCGAAGAGAGAAGCTCAGCCAACGGTTCATTGCTCTATCTGCTCTTGTTCCGGGCCTAAAGAAGATGGACAAAGCTTCGGTTCTTGGAGAAGCTATAAAGTATTTGAAGCAAATGCAAGAGAAAGTGAGTGCTCTTGAGGAGGAACAGAACAGGAAGAGAACTGTGGAATCTGTGGTAATTGTGAAGAAATCTCAGCTATCTAGTGATGCCGAAGACTCTTCTTCAGAGACTGGTGGTACATTTGTCGAGGCACTACCTGAAATTGAAGCAAGATTTTGGGAAAGAAATGTCCTCATAAGAATACATTGTGAGAAGAATAAAGGAGTCATAGAGAAAACAATCAGCGAAATTGAGAAACTCCATCTAAAAGTCATCAATAGCAGTGCCTTGACATTTGGGAGTTTCATCCTGGATATAACCATTATTGCTCAGATGGATATGGAATTTTGCATGACAGTGAAGGATCTTGTGAGAAGTTTACGCTCAGCTTTTTCATATTTCGTGTGA 1110 0.3946 MWLSFFHEFGDISLIASAVFHCMRSSHMEISSIRGLPELGIIEDPNFLHQWQLNSIDTTSLKGAAFGDILQKHSFSDNSNFNPKTSMETSQTGIERYAKQLGDNSWNHNKSQQQTPETQFASCSNLLSFVNTNYTSELGLVKPKVEMACPKIDNNALADMLISQGTLGNQNYIFKANQETKKIKTRPKLSQPQDHIIAERKRREKLSQRFIALSALVPGLKKMDKASVLGEAIKYLKQMQEKVSALEEEQNRKRTVESVVIVKKSQLSSDAEDSSSETGGTFVEALPEIEARFWERNVLIRIHCEKNKGVIEKTISEIEKLHLKVINSSALTFGSFILDITIIAQMDMEFCMTVKDLVRSLRSAFSYFV* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0526 369 SMART finulus 196 245 IPR011598 GO:0046983
Gso15g0526 369 Gene3D - 188 261 IPR036638 GO:0046983
Gso15g0526 369 Coils Coil 229 256 - -
Gso15g0526 369 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 29 368 - -
Gso15g0526 369 PANTHER BHLH TRANSCRIPTION FACTOR 29 368 - -
Gso15g0526 369 Pfam Helix-loop-helix DNA-binding domain 193 240 IPR011598 GO:0046983
Gso15g0526 369 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 190 239 IPR011598 GO:0046983
Gso15g0526 369 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 194 255 IPR036638 GO:0046983
Gso15g0526 369 CDD bHLH_AtNAI1_like 193 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0526 Gso-Chr15 4730713 4734353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0526 190 369 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 59.239 1.05e-61 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso15g0526 HLH 2.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0526 - - gmx:100790824 668.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0526 15 4730713 4734353 Gso15g0526 15 4730713 4734353 ECH
Gso15g0526 15 4730713 4734353 Gso11g2780 11 43578582 43581819 GST
Gso7g1573 7 37514158 37517004 Gso15g0526 15 4730713 4734353 PCT
Gso15g0526 15 4730713 4734353 Gso7g1573 7 37514158 37517004 PCT