Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0520 ATGAAGGAGAACTACTCATACCAATCGTATCCAGATTCAGGCGAGTCCTCTCCACGCTCCAGAGAGATCGACTTCGAGAACCCTCCTCCATGGGACCACCAAAACTACAAAGCCAAGTTCATCTGCAGCTATGGCGGCAAGATCCACCCACGCTCCCACGACAACCAGCTCTCCTACGTCGGCGGCGACACCAAAATCCTCGCCGTCGACCGCTCCATCAAGTTCCCCGCCATGCTTGCCAAACTCTCCGCCCTCTGCGACGCCCAAGACAACAACATCACCTTCAAGTACCAGCTCCCCGGCGAAGACCTCGACGCTCTCATCTCCGTCACCAACGACGACGACCTTGACCACATGATGCACGAGTACGATCGCCTCTACCGCGCTTCCGCTAGACCCTCCCGCATGCGATTATTCCTCTTTCCTTCCGATACTCCTCCTTCGCCTCCACCTGCTTCTGCTCCACCTGATACCGTTATCAAACCTAATAACGTCGATTTTCTCTTCGCTCTCGAAAAAAACGTCGCCGTCCCTGCTCCTCCGCCTCCTCAGCCACCACCGGTTTCTGTCAAATTTAATGATCCGCTGCCGGAGCCTGTGGCGCCGCAGCCGGAGTACCGGTCGCGGTTGAATTTTAACCCTGCGGTTTCGGATCCAAGCGCGATTCAGCGCCAGTTGCATCAATTGCAAATTGCGGAGAACGAGAAAGCTTCGTATCGGAGGAAGAACGAGGATAATTACCCTGCCGGTGATTACTACGTTCAGAAAATGCCCGAGAAGTTCCCGCCAGCGAATTTTCCGGCAAGCGCACCGGGTTATTGGCCTGAAAAACATGTTTCCGGCGAGGCTTATCCGCCGGCGGTTACGGCAACGTCCGGCGGAGGGGAACCGTCGGTTCATATGATTCCGGCGCCGGGGACGTTCTATCATGCACCAGTTATGCGGCCTCCGGCCACTCAGGGATACTACGCAGTGCAACAAATGGGTTCTGATAATTACCGTGAAGCACCGGTTTATGGCGGTGTTCCGCCGCCTAAAGCGGCGATTCCGGCTAGCTTGGCGCCGGCGCAGCAGCCGGTTAAGGCTCCCGCGTATACGGAAGGATTCGGAATGGTTCGGCCAGGTGGGATGCTGGATAATACGGTTGGTCCGTACTCGCAGGTGGCGTACGATAGTGCGAGTGGGAGACAGGTTTATTATACTGTGCCGGGTGGTGGGGTAGTGCACGCTCCTCCGTACCAAGGGGTTTTTCCGCCCGTAACCGCAGATATGAGACCGGGTGTGGTGTCGTTGGGTCAGGATGTTAAAGTCATAAACAAGGTTACTCAAGGTTCAGTGTGA 1341 0.56 MKENYSYQSYPDSGESSPRSREIDFENPPPWDHQNYKAKFICSYGGKIHPRSHDNQLSYVGGDTKILAVDRSIKFPAMLAKLSALCDAQDNNITFKYQLPGEDLDALISVTNDDDLDHMMHEYDRLYRASARPSRMRLFLFPSDTPPSPPPASAPPDTVIKPNNVDFLFALEKNVAVPAPPPPQPPPVSVKFNDPLPEPVAPQPEYRSRLNFNPAVSDPSAIQRQLHQLQIAENEKASYRRKNEDNYPAGDYYVQKMPEKFPPANFPASAPGYWPEKHVSGEAYPPAVTATSGGGEPSVHMIPAPGTFYHAPVMRPPATQGYYAVQQMGSDNYREAPVYGGVPPPKAAIPASLAPAQQPVKAPAYTEGFGMVRPGGMLDNTVGPYSQVAYDSASGRQVYYTVPGGGVVHAPPYQGVFPPVTADMRPGVVSLGQDVKVINKVTQGSV* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0520 446 CDD PB1_UP2 41 141 - -
Gso15g0520 446 MobiDBLite consensus disorder prediction 1 30 - -
Gso15g0520 446 Coils Coil 222 242 - -
Gso15g0520 446 SMART PB1_new 52 143 IPR000270 GO:0005515
Gso15g0520 446 Pfam PB1 domain 53 142 IPR000270 GO:0005515
Gso15g0520 446 PANTHER OS05G0427100 PROTEIN-RELATED 1 440 - -
Gso15g0520 446 MobiDBLite consensus disorder prediction 1 16 - -
Gso15g0520 446 SUPERFAMILY CAD & PB1 domains 53 146 - -
Gso15g0520 446 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P 1 440 - -
Gso15g0520 446 Gene3D - 58 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0520 Gso-Chr15 4681366 4683063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0520 36 143 MAP Kinase Kinase Kinase AT5G57610 45.370 2.30e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0520 - - gmx:100780332 879.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0520 15 4681366 4683063 Gso11g2788 11 43629298 43631039 GST
Gso7g1564 7 37417530 37419321 Gso15g0520 15 4681366 4683063 PCT
Gso8g0544 8 5013156 5014802 Gso15g0520 15 4681366 4683063 PCT
Gso15g0520 15 4681366 4683063 Gso7g1564 7 37417530 37419321 PCT
Gso15g0520 15 4681366 4683063 Gso8g0544 8 5013156 5014802 PCT