Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0511 ATGGGGAGAGGTAAGATTGCGATTCGAAGGATCGACAACTCCACTAGCCGTCAAGTGACTTTCTCGAAGAGAAGAAATGGATTGCTTAAGAAAGCTAGAGAATTGTCGATTCTTTGTGATGCTGAAGTTGGATTGATGGTGTTCTCCAGCACTGGCAAGCTTTATGACTATGCAAGTACAAGCATGAAATCTGTGATTGAACGCTACAACAAGCTAAAAGAGGAACACCATCACCTCATGAATCCGGCTTCAGAAGCGAAGTTTTGGCAGACAGAAGCAGCAAGCTTGAGGCAACAGCTTCAGTACTTGCAGGAATGCCACAGGCAATTAATGGGGGAAGAACTTATGGGTTTGGGTATTAAAGAACTACAAAGTCTGGAAAACCAACTGGAGATGAGTTTAAAGGGTGTCCGCATGAAAAAGGACCAAATTTTAACTAATGAGATTGAAGAACTACGCCAAAAGGGAAATCTCATTCATCAAGAAAATGTTGAACTCTATCAAAAGATGGAGCAGATCCAAAAAGAAAATGCAGAGCTACAGAAGAAGGTTTATGAAGCAAGGAGTACAAATGAAGAAAATGTGGCATCCAATCCTTCTTATAAGGTCAGAAATGGATATGATTTACATGCACCTATTAGTCTCCAACTAAGTCAGCCACAGCCTCAATACAGTGAACCATCAGCCAAAGCAATAAAACTCGGATTGCAGCTGCATTAG 720 0.4125 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLMVFSSTGKLYDYASTSMKSVIERYNKLKEEHHHLMNPASEAKFWQTEAASLRQQLQYLQECHRQLMGEELMGLGIKELQSLENQLEMSLKGVRMKKDQILTNEIEELRQKGNLIHQENVELYQKMEQIQKENAELQKKVYEARSTNEENVASNPSYKVRNGYDLHAPISLQLSQPQPQYSEPSAKAIKLGLQLH* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0511 239 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Gso15g0511 239 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso15g0511 239 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso15g0511 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gso15g0511 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso15g0511 239 Coils Coil 163 190 - -
Gso15g0511 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso15g0511 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso15g0511 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso15g0511 239 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso15g0511 239 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Gso15g0511 239 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gso15g0511 239 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Gso15g0511 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 238 - -
Gso15g0511 239 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0511 Gso-Chr15 4582155 4596708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0511 1 239 MADS-box Gene Family AT2G14210 62.917 7.09e-95 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso15g0511 K-box 2.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0511 K09264 - gmx:100808145 453.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g0547 8 5038840 5058245 Gso15g0511 15 4582155 4596708 PCT
Gso15g0511 15 4582155 4596708 Gso8g0547 8 5038840 5058245 PCT