Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0497 ATGGTGAGAAGGAAGATACCGATCAAGAAGATCGACAACGTAACTGCGAGGCAGGTGACATTCTCAAAGAGGAAGAGTGGTCTTTTCAAGAAGGCACGCGAGCTCTCTCTTCTCTGTGATTCTGAGATAGCACTCATAGTCTTTTCACCTGGTGGCAAGCTCTTCGACTATGCTAGTTCAAGTATGCAGAAGGTAATTGAAAGGCATATTTTATGGTCAGAGCTGAACCTTGAAAAATTAGACCAATCATGTCCTACGGAGCAGCTTAGATGTAATTATGCTGATTTAAACAAGGAATTTGGAGACAGGACTCGTGAAATGAGACAACTGAATGGAGAAGAACTGCAAGGATTGGCCCTAAGGGAGCTTCAGAAATTAGAAGAACGACTGGTCTCATCCTTGAACCGAGTTTATAAAGCGAAGGTTGAAAATTTTACAAGAGAGATCGATATTCTTAAGCAAAAGGGAAACAAAATCATGGAAGATAACAGGCTGATGAAACAGAGGATAAAACCGAGGAATGAAATATGTTCGGTCCAGAGACACGAGCATGAACAAGGCCGGTCCTTTGACACCTCCCTCACGTTGGGGCTATCTTTTCCTGCTGGCTCAAAGTACAGAGTTTCTGAGCAATGA 636 0.4292 MVRRKIPIKKIDNVTARQVTFSKRKSGLFKKARELSLLCDSEIALIVFSPGGKLFDYASSSMQKVIERHILWSELNLEKLDQSCPTEQLRCNYADLNKEFGDRTREMRQLNGEELQGLALRELQKLEERLVSSLNRVYKAKVENFTREIDILKQKGNKIMEDNRLMKQRIKPRNEICSVQRHEHEQGRSFDTSLTLGLSFPAGSKYRVSEQ* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0497 211 Pfam K-box region 86 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso15g0497 211 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso15g0497 211 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso15g0497 211 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso15g0497 211 PANTHER - 1 195 - -
Gso15g0497 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gso15g0497 211 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Gso15g0497 211 ProSiteProfiles K-box domain profile. 86 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso15g0497 211 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 195 - -
Gso15g0497 211 Coils Coil 135 155 - -
Gso15g0497 211 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso15g0497 211 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso15g0497 211 SUPERFAMILY SRF-like 3 79 IPR036879 GO:0003677|GO:0046983
Gso15g0497 211 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gso15g0497 211 CDD MADS_MEF2_like 3 69 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0497 Gso-Chr15 4478370 4488726 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0497 1 169 MADS-box Gene Family AT2G22540 52.632 1.33e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso15g0497 K-box 7.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0497 - - gmx:100779995 412.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0497 15 4478370 4488726 Gso11g2810 11 43819800 43831059 GST