Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0496 ATGACGAGAAAGAAGATCCCAATCAAGAAGATCGACAACATAAACGCGAGGCAGGTAACATTCTCAAAGAGGAGAAAAGGTCTTTTCAAGAAGGCTCAGGAGCTGTCAACTCTCTGTGATGCTGAGATTGCTCTCATAGTCTTTTCCGCCACTGGCAAGCTCTTTGAGTACGCTAGTTCAAGCATGCAACAAACACTTGAAAGGCGTAATCAGCATTCAGGGATTCAAGGATTGGATAATTCATCTATTGGTCAACAGCTTGGAAGTGACTCCTTTGGCATGCTGCCGTTGCGCAAGGAAATAGAAGATAAGACTAATGAACTGAGTCAGTTGAATGAGGAAGAGTTGCAAGGATTGAAAATAAAAGAATTGCAGAAACTGGAGGACATTCTTCAAAGACGTTGGACCACTATTTCAAAAACTAAGGACGAAAAAGTTATACAAGAGATCAACCACCTTAAAACAAAGGAAGCCAAACTTATGGAAGAGAACCAGAAATTGAAGCAGAGCTTCTTACAAGAACAAAGGCAATCATACGAGTCATTTACCTGTAGTTCATCTGAATTTCCTCCGGACAATGGTAGTTCAGACACATCTCTCAAGCTGGGGTTGTCTTTGTTTGAATGA 627 0.4115 MTRKKIPIKKIDNINARQVTFSKRRKGLFKKAQELSTLCDAEIALIVFSATGKLFEYASSSMQQTLERRNQHSGIQGLDNSSIGQQLGSDSFGMLPLRKEIEDKTNELSQLNEEELQGLKIKELQKLEDILQRRWTTISKTKDEKVIQEINHLKTKEAKLMEENQKLKQSFLQEQRQSYESFTCSSSEFPPDNGSSDTSLKLGLSLFE* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0496 208 Pfam K-box region 97 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso15g0496 208 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso15g0496 208 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso15g0496 208 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso15g0496 208 ProSiteProfiles K-box domain profile. 87 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso15g0496 208 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Gso15g0496 208 Coils Coil 150 170 - -
Gso15g0496 208 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso15g0496 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gso15g0496 208 MobiDBLite consensus disorder prediction 182 208 - -
Gso15g0496 208 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso15g0496 208 PANTHER - 1 179 - -
Gso15g0496 208 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Gso15g0496 208 MobiDBLite consensus disorder prediction 182 202 - -
Gso15g0496 208 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gso15g0496 208 Coils Coil 94 114 - -
Gso15g0496 208 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 179 - -
Gso15g0496 208 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0496 Gso-Chr15 4467796 4474805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0496 1 204 MADS-box Gene Family AT2G22540 46.835 1.08e-57 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso15g0496 K-box 1.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0496 - - gmx:100779453 388.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0496 15 4467796 4474805 Gso15g0496 15 4467796 4474805 ECH
Gso15g0496 15 4467796 4474805 Gso11g2811 11 43832954 43840243 GST
Gso8g0570 8 5251260 5261703 Gso15g0496 15 4467796 4474805 PCT
Gso15g0496 15 4467796 4474805 Gso8g0570 8 5251260 5261703 PCT