Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0484 ATGGCGCATCGCTCACTCTTCCTCTCTCTCAGACGCTTCTCATCATGCAGAAATAGCGGTTTAGCTTGTGTCCTGAACAGAACAAGATTCGTGTCTTCGGGTGCTGTGAGCAGTGATTTGGTGGAAGAGAGTGTGGAAGGTGATGATGACCTAAGGAGCAGAATCTTCAGGCTTAGGCTCCCCAAGCGAAGCGCCACCAACGTTCTTCAGAAATGGGTCCTCCAAGGGAATCCTATTACGCTCTCTCAGCTTCGGGATATATCCAAAGAGCTTCGAAGATCTCAACGTTACAAACACGCTTTGGAGATATCAGAGTGGATGGTTAGCAATGAGGAATATGAGTTATCAGACTCTGATTATGCAGTCCGCATAGATTTGATGACCCAAGTTTTTGGCATTGATGCTGCAGAGCGCTACTTTGAGGGTCTACCTCTTGCTACAAAGACTACTGAAACATACACAGCACTCCTCCATTCTTACGCAGGAGCAAAATTGACTGAAAAGGCTGAGGAACTTTATCAAAGGATAAAGGATTCAAACCTTTCCTTTGATGCTCTTACTTACAATGAAATGATGACTCTTTACATGTCAGTGGGGCAGTTTGAAAAGGTCCCTATAGTTGTTGAAGAACTGAAACAACAAAAGGTTTCCCCTGATATCTTTACTTACAATCTATGGATAAGTTCCTGTGCCGCTATTCTTAATATCGATGAAGTTAGGAGGATTCTTGATGAAATGAGTCACGGTGCTGGTTCTAATGAAAGTTGGATCAGATATTTGAACCTGGCCAATATATATATTAGTGTAGCTCATCTTGATAATGCAAGTTCCAACACACTTGTTGAGACTGAGAAAAGGATCACCCAAAGGCAATGGATAACTTATGACTTCTTAATCATTCTTTATGGTGGGTTGGGAAGTAAGGATAAACTTGATCAGATATGGAATTCCTTGGGAATGACCAAACAGAAAATGATTAGCAGGAATTACATGTGCATCATTTCTTCCTATCTGATGCTTGGTCTTACGAAAGAAGTGGGTGAAGTTATTGATCAATGGAAGCAATCAACGACCACGGATTTTGATATGCTTGCCTGTAAAAAGATTTTGGTTGCTTTTAGGGACATTGGCTTAGCTGAAATAGCCAACAACTTGAATGTGATTCTCATTGAGAAGAACCTCAGTCTTGGAAGTGATTAA 1200 0.4133 MAHRSLFLSLRRFSSCRNSGLACVLNRTRFVSSGAVSSDLVEESVEGDDDLRSRIFRLRLPKRSATNVLQKWVLQGNPITLSQLRDISKELRRSQRYKHALEISEWMVSNEEYELSDSDYAVRIDLMTQVFGIDAAERYFEGLPLATKTTETYTALLHSYAGAKLTEKAEELYQRIKDSNLSFDALTYNEMMTLYMSVGQFEKVPIVVEELKQQKVSPDIFTYNLWISSCAAILNIDEVRRILDEMSHGAGSNESWIRYLNLANIYISVAHLDNASSNTLVETEKRITQRQWITYDFLIILYGGLGSKDKLDQIWNSLGMTKQKMISRNYMCIISSYLMLGLTKEVGEVIDQWKQSTTTDFDMLACKKILVAFRDIGLAEIANNLNVILIEKNLSLGSD* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0484 399 TIGRFAM PPR: pentatricopeptide repeat domain 152 184 IPR002885 -
Gso15g0484 399 Pfam Pentatricopeptide repeat domain 173 230 IPR002885 -
Gso15g0484 399 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
Gso15g0484 399 PANTHER BNAC02G00860D PROTEIN 1 396 - -
Gso15g0484 399 Gene3D Tetratricopeptide repeat domain 89 273 IPR011990 GO:0005515
Gso15g0484 399 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 218 IPR002885 -
Gso15g0484 399 PANTHER OS12G0527900 PROTEIN 1 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0484 Gso-Chr15 4382992 4385928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0484 54 353 EF-hand Containing Proteins AT1G02150 32.890 2.63e-53 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0484 - - gmx:100811179 776.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0484 15 4382992 4385928 Gso8g1463 8 14261910 14264863 GST