Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0482 ATGTCTCACTCCGACAGCAGCAAGAAGAAGAAGCAGCAGCAGCGTAGCAAGCACGAAGGAGGAGGAGGAGAGGAAGAATCGAAAGACGAAGGCGGGTTGATGATCAAGCCGCAGAGCTTCACTCCCCCAATCGACACCTCCCAATGGCCCATCCTCCTCAAAAACTATGAGCGTCTCAATGTCCGCACCGGCCACTACACCCCCATCCCCTCCGGCTACTCCCCCTTGAAGCGCCCCCTCGCCGAGTACCTCAAATACGGCGTCCTCAACCTCGACAAGCCCGCCAACCCTTCCTCCCACGAGGTCGTCGCCTGGATCAAGCGCCTCCTCCGCGTCGAAAAGACCGGCCACTCCGGCACCCTCGACCCCAAGGTCACCGGCAACCTCATCGTCTGCATCGACCGCGCCACTCGCCTCGTCAAGTCCCAGCAGGGCGCCGGCAAGGAGTACGTCTGCATCGCCCGCCTCCACTCCGACGTCCCCGACGTCTCCAAGGTCGCCCGCGCCCTCGAAACCCTCACCGGCGCCGTCTTCCAGCGTCCCCCCTTGATTTCCGCCGTCAAGCGCCAGCTCCGGATTCGGACCATCTACGAAAGTAAGCTCCTTGAGTATGACCCTGATAGGCACTTGGTTGTTTTCTGGATTTCCTGTGAGGCTGGCACCTATGTTAGGACTATGTGTGTGCACTTAGGCTTGCTTCTTGGTGTGGGTAGCCACATGCAGGAGCTTAGGAGGGTCAGGTCTGGGATCATGGGGGAGAAGGATAACATGGTCTCCATGCATGATGTCATGGATGCTCAGTGGGTTTATGATAATTATAGGGATGAGACTTATTTGAGGAGGGTTGTTATGCCCTTGGAGATTCTTCTGACTAGCTATAAGAGGCTTGTTGTCAAGGATTCTGCTGTCAATGCTATTTGTTATGGTGCTAAGTTCATGATTCCTGGGTTGCTTAGGTTTGAGAATGATATTGATGTTGGGGAGGAGGTTGTGCTTATGACTACCAAGGGTGAGGCTATTGCTCTTGGGATTGCTGAGATGACTACTGCTGTTATGGCCACTTGTGATCATGGGGTTGTGGCCAAGATCAAGAGGGTGGTCATGGATAGGGATACTTATCCCAGGAAGTGGGGCTTGGGCCCGAGGGCGTCCATGAAGAAGAGGCTTATTAGTGAAGGGAAGCTCGATAAGCATGGGAAGCCCAATGAGAAGACCCCCCAGGAGTGGCTTAGGAATTTGGTTTTGCCAACTGGTGGGGATAGTGTGATTGCTGGCTTGGCTGCTGCGCCGGAACCTGAGGATGACAAGATTCAGAAGAAGGAGGGAGATGGGGAAGGGAAGAAGAGAAAGAAGCATGAAAGCACAGATAGCCCCGTTGCTGTTCCTGCTAAGAAGGTGAAAGTGGATGAAGTGGAAGAGGTTGAAAAGCAAGAAAAGGTGAAGGTGAAGAAGGTAGATGAAGAGACTGTGGAGGTTGAAGTTGAGAAGAAGGAGAAGAAGAAGAAAAAGAAGAAGAATAAGGAGAACAGCGAAGCAGCCTCTTCTGATGAGGAGAAAACTGAGAAGAAGAAGAAGAAGCACAAGGATAAGGTTGAAGATAGTTCGCCAGAGTTAGACAAGTCTGAGAAGAAAAAGAAGAAGAAGAAAGACAAAGAAGCTGCTGCTGCTACTGCTGAAATTAGCAATGGAAAGGAGGATGACAGTAATGCTGATAAGAGTGAAAAGAAGAAGCACAAGAAAAAGAAAAACAAAGATGCTGACGAAGAATAG 1770 0.5164 MSHSDSSKKKKQQQRSKHEGGGGEEESKDEGGLMIKPQSFTPPIDTSQWPILLKNYERLNVRTGHYTPIPSGYSPLKRPLAEYLKYGVLNLDKPANPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSDVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDRHLVVFWISCEAGTYVRTMCVHLGLLLGVGSHMQELRRVRSGIMGEKDNMVSMHDVMDAQWVYDNYRDETYLRRVVMPLEILLTSYKRLVVKDSAVNAICYGAKFMIPGLLRFENDIDVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKRLISEGKLDKHGKPNEKTPQEWLRNLVLPTGGDSVIAGLAAAPEPEDDKIQKKEGDGEGKKRKKHESTDSPVAVPAKKVKVDEVEEVEKQEKVKVKKVDEETVEVEVEKKEKKKKKKKNKENSEAASSDEEKTEKKKKKHKDKVEDSSPELDKSEKKKKKKKDKEAAAATAEISNGKEDDSNADKSEKKKHKKKKNKDADEE* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0482 589 SUPERFAMILY PUA domain-like 293 374 IPR015947 -
Gso15g0482 589 MobiDBLite consensus disorder prediction 16 32 - -
Gso15g0482 589 MobiDBLite consensus disorder prediction 427 589 - -
Gso15g0482 589 ProSiteProfiles PUA domain profile. 293 368 - -
Gso15g0482 589 Pfam tRNA pseudouridylate synthase B C-terminal domain 224 290 IPR032819 -
Gso15g0482 589 MobiDBLite consensus disorder prediction 505 555 - -
Gso15g0482 589 Coils Coil 569 589 - -
Gso15g0482 589 SUPERFAMILY Pseudouridine synthase 46 291 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Gso15g0482 589 Gene3D Pseudouridine synthase 79 285 - -
Gso15g0482 589 TIGRFAM unchar_dom_2: uncharacterized domain 2 289 365 IPR004521 GO:0003723
Gso15g0482 589 MobiDBLite consensus disorder prediction 1 41 - -
Gso15g0482 589 Gene3D PUA domain 46 377 IPR036974 GO:0003723
Gso15g0482 589 SMART pua_5 294 368 IPR002478 GO:0003723
Gso15g0482 589 Coils Coil 485 507 - -
Gso15g0482 589 Pfam DKCLD (NUC011) domain 46 103 IPR012960 -
Gso15g0482 589 TIGRFAM CBF5: putative rRNA pseudouridine synthase 53 378 IPR004802 GO:0006396
Gso15g0482 589 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 4 4 588 - -
Gso15g0482 589 Pfam PUA domain 294 366 IPR002478 GO:0003723
Gso15g0482 589 SMART DKCLD_2 45 103 IPR012960 -
Gso15g0482 589 Pfam TruB family pseudouridylate synthase (N terminal domain) 107 223 IPR002501 GO:0006396
Gso15g0482 589 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 4 588 IPR004802 GO:0006396
Gso15g0482 589 MobiDBLite consensus disorder prediction 432 498 - -
Gso15g0482 589 CDD PseudoU_synth_hDyskerin 85 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0482 Gso-Chr15 4374276 4376372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0482 1 467 NAC Transcription Factor Family AT3G57150 81.585 0.0 748
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0482 K11131 - gmx:100806355 907.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0482 15 4374276 4376372 Gso8g1465 8 14276382 14278608 GST