Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0481 ATGGGTCTGCATCATCACAGAAAGTTGATGCCATTGCCAGAAATCTGCGGGTCAATTTGCCATGTGAAGAAGTCTGAGCTTTGTTCATCAGATTGCAAAGTTTGCCTCAAGATCTGCCTAACCAATTATTCTCCTCCAACGCTACCACCACAAGTTCCTCCTTTTCAATCATATGATGATGGTGCAGCAGATCAAGCATACAACCACAAAATCTCCACCTATTTGTTCCTTGCACTTGCTCTTCTAACTGCTGCTTTCTTTGTCGTTTGTTGTCGTGCCATCTATACCAGGTTTAGCTCAAGGAGGAGGGTATCATCAACATCAGGGCGCCAAAACCAAACACACCATGATGATGATGATTTTGTTGATGAAGAGAATGGCCCTATGGTGGACCACCCCATATGGTATATCCGCACCCTTGGCCTTCAGCAATCGATTATCAATGCCATCACAGTTTGTAAGTATAAGAAAGGAGAGGGCTTGATTGAAGGAACGGATTGTGCTGTTTGCTTGAGTGAGTTTCAAGAGGACGAGAATCTCAGACTTTTGCCAAAATGTCACCATGCTTTTCATCTTCCTTGTATCGATACCTGGCTTAGGTCTCATACCAATTGTCCTATGTGCCGGGCTCCAATTGTTGCTGACCTTGCAACTGCAAGGATGGAGTCTAGTTTTGTTGATTCAAGTTCCTTGGAAAACAGCCACATGGAAGTTTTGGAAAATAGTGCTCCTGATTCTGAATTGATGAATAATAGGGCAGAGGAGGAAGAAGGCCAATTGGAAGTTGAAGATGGAGTGAGGGTTTGTGAAACTGAAACCCCAGTTGAAGATGTGGCAAGCACTCTTCCTAGAAGTTCGGTTTCTCTGGATTCTTTTTCTTTTGCAAATTTCAATCTTGCTCTTGCAACAGTAGAGTCTAATGGTAACTCAAAAAGAGTGCTGGGAGGTGTGGATGATGATCCTACTGCTTCAAAGGGGGTTATTGGAAACGATTTGGCAACTAGTTCCAAAGGTAGCTCCTCTTTCAGGTTAGCGAGATATCTGCAGGGTGTTCCTAGTTCTTCAGTGAAAAGGTCACAGTCCTTTAATGGGAAATACCTTCTATCCTGGTATGGCTGCAGTCAGAAGAAGCCAAATGCTCCTCTGAGAAGCTTTTGA 1158 0.437 MGLHHHRKLMPLPEICGSICHVKKSELCSSDCKVCLKICLTNYSPPTLPPQVPPFQSYDDGAADQAYNHKISTYLFLALALLTAAFFVVCCRAIYTRFSSRRRVSSTSGRQNQTHHDDDDFVDEENGPMVDHPIWYIRTLGLQQSIINAITVCKYKKGEGLIEGTDCAVCLSEFQEDENLRLLPKCHHAFHLPCIDTWLRSHTNCPMCRAPIVADLATARMESSFVDSSSLENSHMEVLENSAPDSELMNNRAEEEEGQLEVEDGVRVCETETPVEDVASTLPRSSVSLDSFSFANFNLALATVESNGNSKRVLGGVDDDPTASKGVIGNDLATSSKGSSSFRLARYLQGVPSSSVKRSQSFNGKYLLSWYGCSQKKPNAPLRSF* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0481 385 Coils Coil 236 256 - -
Gso15g0481 385 SMART ring_2 167 208 IPR001841 -
Gso15g0481 385 Pfam Ring finger domain 166 209 IPR001841 -
Gso15g0481 385 CDD RING-H2_PA-TM-RING 166 209 - -
Gso15g0481 385 ProSiteProfiles Zinc finger RING-type profile. 167 209 IPR001841 -
Gso15g0481 385 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 376 IPR044675 -
Gso15g0481 385 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 376 - -
Gso15g0481 385 MobiDBLite consensus disorder prediction 106 125 - -
Gso15g0481 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 216 IPR013083 -
Gso15g0481 385 SUPERFAMILY RING/U-box 161 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0481 Gso-Chr15 4370555 4372064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0481 71 261 C3H Transcription Factor Family AT1G72220 47.423 2.81e-48 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0481 - - gmx:100804758 763.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0481 15 4370555 4372064 Gso8g1466 8 14281349 14282905 GST