Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0472 ATGGAGAAGGAGAAGGAGAACTGGGAGATGCCAATGGCCACCTTTCTCATAGACCACCATTCCGACCAGCTCCGCTCCATCTCTTCTTCTCCGGATCCCAACCTTCACTTCCCTCTTTTCATCGATTACGCTGAGTTGATGGAGGATAATCCTCGCATTGCACGTCTCCTCTTTGCCCAACCCAAAACCTACTTGCCAGTATTCGATGATGCTGCCCTTTGGGCCCATAAAATCGTATTGCGAGAAATGCCGGATGACAAGAAGGGGGTTGAGAAAAAATTCATTCATGTTCGTATTAACATCAGTGGCTCACCCCTTGAATGCCCTGAAACTTTTCCAAGCATAGGGCGTGTTCGAGTGCACCACCGTGGAATTCTTCTCACTCTCAAGGGGATAGTTATCAGGTCAGGAGCAATCAAGATGCATGAAGGGGAGAGGAAGTATATTTGCCAAAAATGCAAAAACAGCTTCCCAGTTTATCCCGAGGTGGAAGCTCGAAACTCCATATCACTACCTTCAATTTGCCCAATTCAGCAGTCCAAGCCCTGTGGTGGCACAAAATTCCAGTATGAAGAGAATACTATAGTATGCCATGATTATCAGGAGATAAAGATTCAAGAAAGTACACAGGTGCTAGGTGTTGGGGCAATTCCTCGTTCAATTCTTGTCATCTTAAAGGATGACCTTGTGGATGTTGTTAAAGCTGGAGATGATGTGATTGTCACTGGTCTCTTAACAGCAAAATGGTCTCCAGAGTTGAAAGATGTGCGCTGTGACCTTGATCCTGTATTAATTGCCAACAATATAAGGAGAATCAATGAACTGAAGTCAGAAATTGATATTTCTGATGATATGGTTAAGAAATTCGAGCAGTTTTGGGTTCACTTCAAAGATTCACCTCTAAAAGGGAGGAATGCTATTCTACGAGCAATTTGCCCACAAGTATTTGGCCTTTTCACTGTCAAGCTGGCTGTTGCATTAACACTTATCGGAGGTGTGCAACATGTTGATGCTTCTGGAACTAGGGTAAGAGGGGAGTCCCACTTACTCTTGGTTGGTGATCCTGGCACCGGAAAATCTCAGTTTCTTAAATTTGCTGCAAAATTGAGCAACCGTTCTGTTATTACCACTGGGTTGGGAAGCACAAGTGCAGGATTGACTGTTACTGCAGTGAAGGATGGAGGGGAATGGATGTTAGAAGCTGGGGCTCTTGTTTTAGCAGATGGAGGCTTGTGTTGCATTGATGAATTTGATAGTATGAGGGAACATGATAGAGCAACTATACATGAAGCCATGGAGCAGCAGACAATAAGTGTTGCCAAGGCTGGTCTTGTAACAACACTAAGCACTAGAACAACTGTATTTGGTGCCACAAATCCCAAAGGACAGTATGATCCTGATCAACCTCTGTCCATCAATACAACACTCTCTGGTCCTTTATTAAGCAGGTTTGATATTGTCCTTGTTCTCTTGGATACAAAAAATCCTGATTGGGATGCAGTAGTTTCATCTCATATTCTTTCTGAGGCAGAACTGGATAGAACCACCAATGATGAAGATCTGGTAAACAGCTGGCCACTTCCTACACTCAAGAGGTACATACACTATGTGAAAGAACATTTCAGACCAGTCCTTACGAGAGAGGCTGAAATAGTTATATCTAGCTATTATCAACTTCAAAGGAAATCTGCTACTCATAATGCAGCTAGAACAACTGTCCGTATGTTGGAAAGTTTGATACGCCTAGCTCAAGCCCATGCAAGGTTGATGTTCAGAAATGAGGTGACTCGACTAGATGCCATCACGGCTATTTTATGCATAGAATCCTCCATGACTACCTCAGCTATTGTGGATTGCATTGGGAATGCTCTGCATTCCAATTTTACTGACAACCCTGATCAGGAATATGCGAGGCAAGAAAGATTGATCCTAGAAAAATTGGGATCAATAGACGACATTTGA 1962 0.4327 MEKEKENWEMPMATFLIDHHSDQLRSISSSPDPNLHFPLFIDYAELMEDNPRIARLLFAQPKTYLPVFDDAALWAHKIVLREMPDDKKGVEKKFIHVRINISGSPLECPETFPSIGRVRVHHRGILLTLKGIVIRSGAIKMHEGERKYICQKCKNSFPVYPEVEARNSISLPSICPIQQSKPCGGTKFQYEENTIVCHDYQEIKIQESTQVLGVGAIPRSILVILKDDLVDVVKAGDDVIVTGLLTAKWSPELKDVRCDLDPVLIANNIRRINELKSEIDISDDMVKKFEQFWVHFKDSPLKGRNAILRAICPQVFGLFTVKLAVALTLIGGVQHVDASGTRVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTTVFGATNPKGQYDPDQPLSINTTLSGPLLSRFDIVLVLLDTKNPDWDAVVSSHILSEAELDRTTNDEDLVNSWPLPTLKRYIHYVKEHFRPVLTREAEIVISSYYQLQRKSATHNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAIVDCIGNALHSNFTDNPDQEYARQERLILEKLGSIDDI* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0472 653 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 313 620 IPR027417 -
Gso15g0472 653 Pfam MCM P-loop domain 305 508 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso15g0472 653 Pfam MCM AAA-lid domain 529 610 IPR041562 -
Gso15g0472 653 SMART AAA_5 345 494 IPR003593 -
Gso15g0472 653 CDD MCM9 306 610 - -
Gso15g0472 653 PRINTS Mini-chromosome maintenance (MCM) protein family signature 344 359 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso15g0472 653 PRINTS Mini-chromosome maintenance (MCM) protein family signature 402 416 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso15g0472 653 PRINTS Mini-chromosome maintenance (MCM) protein family signature 430 443 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso15g0472 653 PRINTS Mini-chromosome maintenance (MCM) protein family signature 480 488 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso15g0472 653 Gene3D - 118 246 IPR012340 -
Gso15g0472 653 Gene3D - 277 616 IPR027417 -
Gso15g0472 653 Pfam MCM OB domain 118 246 IPR033762 -
Gso15g0472 653 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 30 649 IPR031327 GO:0003677|GO:0005524|GO:0032508
Gso15g0472 653 SMART mcm 111 612 IPR031327 GO:0003677|GO:0005524|GO:0032508
Gso15g0472 653 Gene3D - 142 198 - -
Gso15g0472 653 ProSiteProfiles MCM family domain profile. 303 506 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso15g0472 653 PANTHER DNA HELICASE MCM9 30 649 - -
Gso15g0472 653 SUPERFAMILY Nucleic acid-binding proteins 36 253 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0472 Gso-Chr15 4308844 4318294 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0472 12 635 Core DNA Replication Machinery Family AT2G14050 77.352 0.0 1019
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0472 K10738 - gmx:100776255 1281.16