Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0470 ATGGAAAACGACGACGTCGACATGCACGCTGCCGACACCAGCGAAGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCTGCTTTGCGAGAGATGCAGGCCAAGGTCGAGAAGGAAATGGGATCTGCGCAAGATCCTGCAAATGCTTCTGCGAGTCAGGCCAATAAAGAGGAAATAGATTCTCGATCAGTCTTTGTAGGCAATGTGGACTATTCATGCACTCCTGAAGAAGTGCAACAGCATTTTCAGTCTTGTGGAACAGTAAACAGAGTCACCATTCGAACTGATAAGTTTGGCCAACCCAAGGGTTATGCCTATGTTGAGTTCCTTGAGGTGGAGGCTGTTCAGGAGGCCCTTTTGCTGAATGAATCTGAACTTCATGGGCGCCAATTAAAGGTAACGGCTAAAAGGACCAACATACCAGGGATGAAACAGTATCGTCCCCGTCGGACCATCAATCCTTACATGGGGGGGTTTCGAGGCAGAACCCCATATGCACCTCCCTTTATCTACTCTCCATATGGATATGGAAAGGTTCCAAGGTTCAGAATGGCAATGCGCTACAGCCCCTACTATTGA 594 0.4815 MENDDVDMHAADTSEELDDMKKRLKEMEDEAAALREMQAKVEKEMGSAQDPANASASQANKEEIDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRTINPYMGGFRGRTPYAPPFIYSPYGYGKVPRFRMAMRYSPYY* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0470 197 PANTHER - 4 194 - -
Gso15g0470 197 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 137 IPR000504 GO:0003723
Gso15g0470 197 SUPERFAMILY RNA-binding domain, RBD 55 167 IPR035979 GO:0003676
Gso15g0470 197 CDD RRM_II_PABPs 68 139 - -
Gso15g0470 197 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 143 IPR000504 GO:0003723
Gso15g0470 197 MobiDBLite consensus disorder prediction 1 22 - -
Gso15g0470 197 Coils Coil 10 44 - -
Gso15g0470 197 MobiDBLite consensus disorder prediction 41 63 - -
Gso15g0470 197 Gene3D - 4 140 IPR012677 -
Gso15g0470 197 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 4 194 - -
Gso15g0470 197 SMART rrm1_1 68 139 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0470 Gso-Chr15 4297236 4301770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0470 68 138 Eukaryotic Initiation Factors Gene Family AT2G36660 31.944 1.02e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0470 K14396 - gmx:100791351 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0470 15 4297236 4301770 Gso8g1473 8 14340619 14345301 GST