Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0460 ATGGCGGAGGGTGCTTCTTACGGATTGCGTCGTCCATTAGATATTCAGCAATTACAATTTGAAGCCCAGCATCGATGGTTGCGACCTGCAGAAATTTGTGAAATTCTTCGTAATTATCGGATGTTTCATATCACATCAGAACCTCATAACAGGCCACCAAGTGGTTCACTTTTTCTTTTTGATCGAAAGGTTTTGAGATACTTTAGAAAGGATGGGCATAATTGGAGAAAGAAAAAAGATGGAAAAACTGTGAAAGAAGCTCATGAAAAGTTGAAGGTTGGAAGTGTTGATGTGTTGCACTGCTACTATGCCCATGGAGAAGAAAATGAAAATTTTCAAAGGCGAAGCTACTGGATGCTTGAACCGGATATGATGCACATAGTATTTGTCCATTACTTGGAAGTTAAGGGTAACAAAAGTATTGTTGTAAATAATGAAGGTGATGAAGTCCCAACAGATTCCCAAAAGGTAACTTCTCCATCGTCTAGCCTTCCCACACATCATAGCTGTGTTTCTTCACTGAGTACAGATTCCGTGAGCCCAACAACCAGTTTGATGTCTTTACATGAAGATGCTGATTCTGAGGATATCCACCATGCAAGTTCTGGGTTGCACCCATTACATGAGTCACAACATAGTGGGAATAGTCCATTGACGGAAAAGATTGGTGCTGGTTCGAACAGTTCATATCTTATGCATCCCTTTTCAGGTGATAATGAACAGTCATCAATTTCTGGAACGGATTATATCCCTGTTGTTCATGGGGATAAATTTAGAGGAAATGATACTGCTTATACTGATGGTCAGAAACCGCATGGCATGGCACCATGGGGCACTGTCTTGCAAAGCACTGCCAAATTGCACAATGATCCTTCTCTTGCATCATTTCCTTCCATCCTACCTAGTTCAATGGGAGACGTCCTTGAACAAGAACATACCATTTTTGGTGACCTTTTAATGAGCAAAAGTGGTCTCACTGAGGAAGCAGAGAGTTCTCAGTCTCTCCAATCAAATTGGCAGATTCCTTTTGAAGACAATTCAGGAGGCATGCCAATGTTAACCCAAACCCAATCATTTGGTCTGCAATTTAGATCTGATTATGGCACCGGTTTACTAGGGAACGAAACTCGTAATGCAAGTTCTGAAATTGCTCCGATCCTGTACAGTTTTCATGGTGAACCAAAAGAGCAGCCTATGCAGCAAAACTATCCACAAGAGCTTGAAGATGGACAATCTCAACATGCACTAAAATCCAATTCTGCAAATAAAGTTCCTGATGAAGAAACTATCAACTATGGCTTAACAGTGAAGAGCACATTATTGGACAGAGACGAGAGCCTGAAGAAGGTTGATAGCTTCTCTCGGTGGATTACTAAGGAACTTGGAGAGGTGGCTGATTTGAATATGCAGTCCTCACCTGGTATTTCATGGAGTACAGATGAATGCCAGCATGTGATAGATGATACCTCATTGAGCCCATCTCTCTCTCAAGACCAACTGTTTAGTATAAATGATTTTTCACCTAAATGGGCTTATGCTGAGTCTGAAATTGAGGTGTTGATTATTGGATCATTTTTGAAGAGTCAACCAGAGGTGACAACCTGTAACTGGTCCTGTATGTTTGGGGAAGTTGAGGTTCCTGCTGAGGTCTTAGCTGATGGAATTTTGTGCTGTCAAGCTCCTTGTCATAAGGTTGGACGGGTCCCTTTCTATGTAACATGTTCCAATAGGTTAGCTTGTAGTGAAGTGCGGGAATTCGATTTCAGAGAGGGCTTTGCTAGAAATGTAGATTTTGCAGATTTTTATATCAGTTCAACTGAAATGCTGCGTCATTTGAGACTGGAGGATTTTCTTTCTTTAAAGCCAGTGGACCCTTCAAATCATTCTTTTGAGGGTGATATGGAGAAAAGAAACTTAATTTTTAAGCTCATTTCACTGAGAGAGGAGGAGGACTATTCAATTAAGGATGAAGTTACTAGAGAATTGGATATATCCCTACACATGGTGAAGGAGCATCTGTTTCACAGGCAGTTTAAAGAGAAGCTGTACTCATGGCTTCTTCACAAAGTAACTGAGAATGGTAAAGGGCCAAATGTATTAGATGAGGATGGGCAAGGTGTTCTACATTTAGCAGCTTTTCTTGGTTATGATTGGGCCATAAATCCAATTATATCTGCTGGAGTTAATATCAACTTCCGAGATGTGAATGGATGGACAGCTCTTCATTGGGCTGCATCCTGTGGCAGAGAGCGGACAGTTGCTGTCCTTGTCTCCATGGGTGCAGATTGTGGAGCACTGACAGATCCATCTCCCGCATTTCCATCTGGTAGAACAGCTGCAGATCTTGCCTCTAGCTATGGGCACAAAGGAATTTCTGGTTTTCTTGCTGAGTCTTCATTAACTCACCACCTCGAAACCCTCACAATGGATGATCAAAAAGGTGGTCAGCAAGAAATTTCAGGAATGAAGGTGGTGCAGACAGTTTCAGAACGATCTGCAACACCTGTGCACTATTGTGATATCCCAGATGCCATCTGCCTCAAGGATTCACTTACTGCTGTGCGTAATGCAACACAAGCTGCTGATCGTATACATCAAGTATACAGAATGCAGTCATTTCAGAGGAAGCAGTTAACTCAGTATGAAGGTGATGATGAGCTTGGATTGTCAGATCAGCAAGCTCTTTCTCTGCTAGCTTCCAGGGCATGCAAATCTGGACAAGGGGATGGTTTAGCCAATGCTGCTGCAGTACAGATACAGAAAAAGTTTCGTGGTTGGAAGAAGAGAAAAGAATTCTTGATGATTCGTCAAAGAGTTGTTAAAATCCAGGCCCATGTTAGAGGTCACCAGGTAAGGAAACAGTATAAACCAATCATATGGTCTGTGGGAATCCTGGAGAAGGTCATATTACGTTGGAGGCGCAAGGGTAGCGGTTTACGTGGATTTCGACCAAATGCCATTAATAAAGTCCCCAATCAACAAAATGATTCTCTGAAAGAGGATGATTATGATTATCTCAAGGAGGGACGAAAACAAAAGGAAGAAAAGATCCAAAAGGCCCTATCAAGGGTGAAGTCCATGGTTCAGTATCCAGAGGCACGTGCTCAATACCGGCGTCTGCTAAATGTTGTTGAGGACTTCCGTCAAACCAAGGCATCTAACAAGGGTTTGATCAATTCTGAAGAGACAGTTGATGGTGTGGAGGATTTGATTGATATTGATATGCTTTTAGACGATGATAATTTCATTCCTATAGCATTTGATTGA 3267 0.4184 MAEGASYGLRRPLDIQQLQFEAQHRWLRPAEICEILRNYRMFHITSEPHNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLEPDMMHIVFVHYLEVKGNKSIVVNNEGDEVPTDSQKVTSPSSSLPTHHSCVSSLSTDSVSPTTSLMSLHEDADSEDIHHASSGLHPLHESQHSGNSPLTEKIGAGSNSSYLMHPFSGDNEQSSISGTDYIPVVHGDKFRGNDTAYTDGQKPHGMAPWGTVLQSTAKLHNDPSLASFPSILPSSMGDVLEQEHTIFGDLLMSKSGLTEEAESSQSLQSNWQIPFEDNSGGMPMLTQTQSFGLQFRSDYGTGLLGNETRNASSEIAPILYSFHGEPKEQPMQQNYPQELEDGQSQHALKSNSANKVPDEETINYGLTVKSTLLDRDESLKKVDSFSRWITKELGEVADLNMQSSPGISWSTDECQHVIDDTSLSPSLSQDQLFSINDFSPKWAYAESEIEVLIIGSFLKSQPEVTTCNWSCMFGEVEVPAEVLADGILCCQAPCHKVGRVPFYVTCSNRLACSEVREFDFREGFARNVDFADFYISSTEMLRHLRLEDFLSLKPVDPSNHSFEGDMEKRNLIFKLISLREEEDYSIKDEVTRELDISLHMVKEHLFHRQFKEKLYSWLLHKVTENGKGPNVLDEDGQGVLHLAAFLGYDWAINPIISAGVNINFRDVNGWTALHWAASCGRERTVAVLVSMGADCGALTDPSPAFPSGRTAADLASSYGHKGISGFLAESSLTHHLETLTMDDQKGGQQEISGMKVVQTVSERSATPVHYCDIPDAICLKDSLTAVRNATQAADRIHQVYRMQSFQRKQLTQYEGDDELGLSDQQALSLLASRACKSGQGDGLANAAAVQIQKKFRGWKKRKEFLMIRQRVVKIQAHVRGHQVRKQYKPIIWSVGILEKVILRWRRKGSGLRGFRPNAINKVPNQQNDSLKEDDYDYLKEGRKQKEEKIQKALSRVKSMVQYPEARAQYRRLLNVVEDFRQTKASNKGLINSEETVDGVEDLIDIDMLLDDDNFIPIAFD* 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0460 1088 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 1088 - -
Gso15g0460 1088 ProSiteProfiles Ankyrin repeat region circular profile. 736 762 - -
Gso15g0460 1088 SMART CG_1_2 18 136 IPR005559 GO:0003677
Gso15g0460 1088 Pfam IQ calmodulin-binding motif 914 932 IPR000048 GO:0005515
Gso15g0460 1088 Pfam IQ calmodulin-binding motif 937 956 IPR000048 GO:0005515
Gso15g0460 1088 SMART iq_5 911 933 IPR000048 GO:0005515
Gso15g0460 1088 SMART iq_5 934 956 IPR000048 GO:0005515
Gso15g0460 1088 Pfam IPT/TIG domain 503 577 IPR002909 -
Gso15g0460 1088 SMART ANK_2a 703 732 IPR002110 GO:0005515
Gso15g0460 1088 SMART ANK_2a 775 804 IPR002110 GO:0005515
Gso15g0460 1088 SMART ANK_2a 736 765 IPR002110 GO:0005515
Gso15g0460 1088 Gene3D - 672 867 IPR036770 -
Gso15g0460 1088 ProSiteProfiles Ankyrin repeat profile. 703 735 IPR002110 GO:0005515
Gso15g0460 1088 SUPERFAMILY Ankyrin repeat 687 797 IPR036770 -
Gso15g0460 1088 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Gso15g0460 1088 ProSiteProfiles Ankyrin repeat profile. 736 768 IPR002110 GO:0005515
Gso15g0460 1088 ProSiteProfiles IQ motif profile. 912 941 IPR000048 GO:0005515
Gso15g0460 1088 ProSiteProfiles IQ motif profile. 935 959 IPR000048 GO:0005515
Gso15g0460 1088 Gene3D Immunoglobulins 496 591 IPR013783 -
Gso15g0460 1088 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 1 1088 - -
Gso15g0460 1088 SUPERFAMILY E set domains 503 588 IPR014756 -
Gso15g0460 1088 MobiDBLite consensus disorder prediction 206 223 - -
Gso15g0460 1088 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Gso15g0460 1088 MobiDBLite consensus disorder prediction 189 205 - -
Gso15g0460 1088 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 912 962 IPR027417 -
Gso15g0460 1088 MobiDBLite consensus disorder prediction 146 188 - -
Gso15g0460 1088 MobiDBLite consensus disorder prediction 146 223 - -
Gso15g0460 1088 Gene3D - 912 958 - -
Gso15g0460 1088 Pfam Ankyrin repeats (3 copies) 708 797 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0460 Gso-Chr15 4204197 4215391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0460 1 1069 CAMTA Transcription Factor Family AT5G64220 53.254 0.0 1085
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Gso15g0460 Ank_2 1.2e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0460 K21596 - gmx:100818124 2165.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0460 15 4204197 4215391 Gso8g1483 8 14428683 14440115 GST
Gso5g0996 5 32865626 32876062 Gso15g0460 15 4204197 4215391 PCT
Gso8g0596 8 5547970 5559441 Gso15g0460 15 4204197 4215391 PCT
Gso15g0460 15 4204197 4215391 Gso5g0996 5 32865626 32876062 PCT
Gso15g0460 15 4204197 4215391 Gso8g0596 8 5547970 5559441 PCT