Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0440 ATGGGAGATAACAATGTCAACCTTCCACCCGGGTTTCGATTTTATCCCACAGATGAAGAGCTTGTGGTCCATTTCCTTCACAGAAAGGCATCTCTTTTACCTTGCCACCCAGATGTCATCCCTGATCTTGAGGTCTACCCATATGATCCATGGGAACTTGATGGTAGAGCTTTAGCAGAGGGGAACCAATGGTACTACTACAGCAGAAGGACACAAAATAGGGTCACTGGAAATGGGTATTGGAAACCAACTGGAATAGAAGAACCAGTGGTTTCAAGCACAAGCAACAAGAGAGTTGGCATGAAGAAATATTTTGTGTTCCATGTGGGAGAAGCCCCTGCTGCTGGTATCAAAACCAATTGGATAATGCAAGAATATCGTCTATCAGATTCTTCTTCCTCTACCAGATCATCCAAAAGAAAATCACAACCAAAAATAGAATACAATAAATGGGTGATATGTCGTGTTTATGAGCGCAATGGCGACGATGATAATGGAACAGAGCTGTCGTGCTTGGATGAAGTATTCTTGTCATTGGATGATGATCTTGATGAAATTAGCTTACCAAATTATTAG 576 0.4167 MGDNNVNLPPGFRFYPTDEELVVHFLHRKASLLPCHPDVIPDLEVYPYDPWELDGRALAEGNQWYYYSRRTQNRVTGNGYWKPTGIEEPVVSSTSNKRVGMKKYFVFHVGEAPAAGIKTNWIMQEYRLSDSSSSTRSSKRKSQPKIEYNKWVICRVYERNGDDDNGTELSCLDEVFLSLDDDLDEISLPNY* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0440 191 SUPERFAMILY NAC domain 5 158 IPR036093 GO:0003677|GO:0006355
Gso15g0440 191 PANTHER NAC DOMAIN-CONTAINING PROTEIN 104 5 186 - -
Gso15g0440 191 ProSiteProfiles NAC domain profile. 8 159 IPR003441 GO:0003677|GO:0006355
Gso15g0440 191 PANTHER NAC TRANSCRIPTION FACTOR 56 5 186 - -
Gso15g0440 191 Pfam No apical meristem (NAM) protein 9 128 IPR003441 GO:0003677|GO:0006355
Gso15g0440 191 Gene3D NAC domain 17 163 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0440 Gso-Chr15 4015585 4017128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0440 1 177 NAC Transcription Factor Family AT1G61110 40.306 4.36e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso15g0440 NAM 2.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0440 - - gmx:100170712 390.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0440 15 4015585 4017128 Gso8g1501 8 14632028 14633595 GST
Gso5g1026 5 33240124 33241994 Gso15g0440 15 4015585 4017128 PCT
Gso8g0625 8 5796246 5797980 Gso15g0440 15 4015585 4017128 PCT
Gso15g0440 15 4015585 4017128 Gso5g1026 5 33240124 33241994 PCT
Gso15g0440 15 4015585 4017128 Gso8g0625 8 5796246 5797980 PCT