Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0427 ATGTCATTCCGCAGCATAGTTCGTGATGTAAGGGATAGTTTCGGGAGCTTATCTAGGCGTAGTTTTGATGTCAGACTTACTGGGCATCATAGAGGAAAATCTCAAGGATCAGTGCAGGATTTGCATGACCAACCTCTAGTAATTCAAAATAGCCGTTGGGCCAGCTTACCCCCGGAATTACTATTTGATATCATTAGACGGCTAGAGGAGAGTGAGAATACATGGCCTGCTCGAAAGCATGTTGTTGCATGTGCTGCAGTTTGCCAGTCTTGGAGGAATATGTGCAAGGACATCGTTAAGAGCCCAGAGTTTTGTGGCAAACTTACATTCCCTGTGTCCTTGAAGCAGCCTGGGCCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAATCTAATTTAACATACCACCTATTCCTTTGTCTCAGCCCTGCTTTGTTAGTTGAAAATGGAAAATTCCTCCTTTCTGCTAAGAGGACAAGGAGAACAACTTACACTGAGTACGTTATTTCCATGGATGCTGACAACATCTCTAGATCAAGTAACACTTACATTGGAAAGCTGAGATCAAATTTTCTTGGTACAAAGTTCATTATATACGATACACAGCCTCCATACTCTTCTGCCCATATATGCCCTCCTGGGACTGGGAAGACGAGCCGCAGATTTTATTCCAAAAAGGTCTCGCCTAAGGTCCCATCTGGGAGTTACAACATAGCTCAGGTAACATATGAATTAAATGTGCTTGGGACTCGAGGACCAAGAAAGATGCACTGCGTTATGCATTCAATACCAGCTTCAGCACTAGATGCAGGTGGCACTGTTCCTGGCCAGCCAGAGCTTCTTCCCCGTTCCCTGGAGGACTCGTTTCGGAGCATCTCGTTTTCAAAGTCTCTAGATCATTCTATTGAGTTCAGCAGTTCGCGATTTTCTGAGATTGGGGAATCCTGCATCGAAGATGATGATGGCAAGATGAGACCCTTGGTTCTGAAAAACAAGCCTCCAAGATGGCATGAACAGTTACAATGTTGGTGCCTTAATTTCCGTGGACGAGTAACAGTTGCGTCTGTTAAAAACTTTCAGTTGATTGCTGCCACCCAACCAGCTGCTGGTGCACCTACACCATCTCAACCAGCTCCACCGGAGCACGATAAGATCATTCTTCAGTTTGGCAAAGTTGGGAAGGACATGTTCACCATGGATTATCGGTACCCTTTATCTGCATTCCAAGCTTTTGCAATATGCTTGAGCAGCTTTGACACCAAATTGGCTTGTGAATAA 1284 0.4447 MSFRSIVRDVRDSFGSLSRRSFDVRLTGHHRGKSQGSVQDLHDQPLVIQNSRWASLPPELLFDIIRRLEESENTWPARKHVVACAAVCQSWRNMCKDIVKSPEFCGKLTFPVSLKQPGPRDGIIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTYTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYSSAHICPPGTGKTSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRKMHCVMHSIPASALDAGGTVPGQPELLPRSLEDSFRSISFSKSLDHSIEFSSSRFSEIGESCIEDDDGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0427 427 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 427 - -
Gso15g0427 427 Pfam Tub family 114 422 IPR000007 -
Gso15g0427 427 Gene3D - 48 100 - -
Gso15g0427 427 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Gso15g0427 427 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Gso15g0427 427 PRINTS Tubby superfamily signature 237 264 IPR000007 -
Gso15g0427 427 PRINTS Tubby superfamily signature 331 348 IPR000007 -
Gso15g0427 427 PRINTS Tubby superfamily signature 349 365 IPR000007 -
Gso15g0427 427 PRINTS Tubby superfamily signature 384 403 IPR000007 -
Gso15g0427 427 PRINTS Tubby superfamily signature 405 427 IPR000007 -
Gso15g0427 427 SUPERFAMILY F-box domain 49 97 IPR036047 GO:0005515
Gso15g0427 427 PANTHER TUBBY-RELATED 1 427 - -
Gso15g0427 427 SUPERFAMILY Tubby C-terminal domain-like 102 427 IPR025659 -
Gso15g0427 427 Gene3D Tubby Protein; Chain A 112 421 IPR025659 -
Gso15g0427 427 Pfam F-box domain 53 100 IPR001810 GO:0005515
Gso15g0427 427 ProSitePatterns Tub family signature 1. 349 362 IPR018066 -
Gso15g0427 427 ProSitePatterns Tub family signature 2. 412 427 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0427 Gso-Chr15 3890459 3894907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0427 1 427 TUB Transcription Factor Family AT1G76900 70.259 0.0 619
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Gso15g0427 Tub 1.1e-117 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0427 K19600 - gmx:100814578 837.025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0427 15 3890459 3894907 Gso8g1517 8 14786869 14791076 GST