Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0391 ATGAGCCCTTGTGCTGCTTGCAAGATTCTGAGGCGAAGATGTGCTGAGAAATGTGTCTTGGCACCTTATTTCCCTCTCACTGAACCTTCCAAGTTTACCACTGCACACCGAGTCTTCGGTGCCAGCAACATCATCAAGTTCTTGCAGGAACTTCCAGAGTCTCAAAGAGCTGATGCAGTGGCCAGCATGGTTTATGAGGCTGGTGCAAGAATAAGAGACCCAGTATATGGATGTGCAGGTGCAATTTGCCAGCTTCAAAAGCAAGTCAATGAACTTCAAGCACAGTTAGCAAAGGCACAAGCTGAGGTTGTAAACATGCAACTCCAACAAGCCAATCTGGTGGCTCTAATTTGCATGGAAATGGCACAAACACAAACTCCACAGGAATATTCACCACAACAATCTGTGGACAACTTCATTTCAAGCACTTCCCACAGCAGTGGCTATCAAAACAATCTCAATTTCTTTGAGGAGAACACCAATAACCTAAACTCTTTGTGGGAGCCTCTTTGGACATGA 519 0.4528 MSPCAACKILRRRCAEKCVLAPYFPLTEPSKFTTAHRVFGASNIIKFLQELPESQRADAVASMVYEAGARIRDPVYGCAGAICQLQKQVNELQAQLAKAQAEVVNMQLQQANLVALICMEMAQTQTPQEYSPQQSVDNFISSTSHSSGYQNNLNFFEENTNNLNSLWEPLWT* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0391 172 ProSiteProfiles LOB domain profile. 2 103 IPR004883 -
Gso15g0391 172 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 1 169 - -
Gso15g0391 172 Pfam Lateral organ boundaries (LOB) domain 3 100 IPR004883 -
Gso15g0391 172 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 169 - -
Gso15g0391 172 Coils Coil 82 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0391 Gso-Chr15 3611803 3613851 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0391 1 172 AS2 family AT2G28500 65.761 1.83e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso15g0391 LOB 7.4e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0391 - - gmx:100798401 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0391 15 3611803 3613851 Gso11g3401 11 49915655 49917860 GST
Gso15g0391 15 3611803 3613851 Gso12g0590 12 5329296 5331423 PCT
Gso15g0391 15 3611803 3613851 Gso11g1251 11 11546450 11548954 PCT
Gso12g0590 12 5329296 5331423 Gso15g0391 15 3611803 3613851 PCT
Gso11g1251 11 11546450 11548954 Gso15g0391 15 3611803 3613851 PCT