Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0384 ATGTTGGATCTTAATCTGAATGCCGAGTCGACTCAGAACAACGAGTCGCTGGTGCTGTTGGACAAGTTTCCCGAAGCTTCGTTGGGAACTTCGAATTCCTCCGTCGTGAATGCGGAGGGGTCGAGCAACGAGGACTCGTGCTCCACACGCGCCGGCGACGTGTTCGCCTTCAGTTTCGGAATCCTTAAGGTGGAAGGCGCGAACGAAGTCGTCGCCACGGCGACGAAGGAGCTGTTTCCGGTGAGCTCGGAGAATTGGCAGGGGCAGAGTTCGACGTCGTCGTCTCAGGCGAGGAAGAATTTAATGGATCTCCCGCTGGATCATCAAAACGGTGAGGTGAAGGTGGTTCAGGTTCAGCCACAGCCTCAGGTGAAGAAGAGTAGGAGAGGTCCAAGGTCTCGGAGCTCTCAGTACAGAGGAGTCACTTTCTACAGAAGGACCGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAGCAAGTCTATTTGGGTGGATTTGACACCGCTCATATTGCTGCTAGGGCCTATGATCGAGCTGCTATTAAGTTCAGGGGACTTGATGCTGATATCAATTTTGATCTCGTTGATTATGAGGAGGATCTAAAACAGATGAAGAATCTTTCAAAGCAGGAGTTCGTGCACATACTTCGCCGCCACAGTACCGGTTTCTCAAGGGGCAGTTCGAAATACCGGGGAGTGACACTTCACAAATGTGGCCGTTGGGAAGCTCGAATGGGACAATTCCTTGGCAAGAAGTATATATATCTTGGGCTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCTATCAAGTGCAATAGAAGAGAGGCTGTCACTAACTTTGAGCCAAGTATATATGAGAGCGAGATGAAACCTGAAGCTATTAATGAAGGTGGCAGTCACGACCTTGACCTCAATCTGGGCATAGCAACCCCAGGACATGGTCCCAAAGAAAATAGGGGCCATCTTCAGTTCCAGTCCATCCCTTACAACATGCATCCCGGAAGAAGTTCAAGGATGGAGACTAATGTTAATTCGGTTATTGGTGATCCTTCTTTGAAAAGGCTGGTTGTAACTGAAGAGCGTCCTTCTGTATATTCCACTTTCTTTCCCAATCTGGAAAGAGCAGAGAGAATGGGCATAGATCCTTCAAAAGGAGTTCCAAACTGGGCGTGGCAGACAAATGGCCAGGTTAATGCCACCCCAGTACCACCGTTCTCTACTGCAGCATCATCAGGATTCTCAATTTCAGCTACTTTTCCATCAACTGCCATCTTTCCAACAAAATCCATGAACCCAATTCCCCAGAGCTTCTGTTTCACTTCACACAGCACACCAGGTAGCAATGCACCTCAATTCTATTACGAGGTCAAGTCCTCGCAGGCACCATCCCAGCCTCTATCTTGTAATACAAGTATAAATGGTAGCCCACCACACAAGTTCTGA 1458 0.4883 MLDLNLNAESTQNNESLVLLDKFPEASLGTSNSSVVNAEGSSNEDSCSTRAGDVFAFSFGILKVEGANEVVATATKELFPVSSENWQGQSSTSSSQARKNLMDLPLDHQNGEVKVVQVQPQPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHIAARAYDRAAIKFRGLDADINFDLVDYEEDLKQMKNLSKQEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNRREAVTNFEPSIYESEMKPEAINEGGSHDLDLNLGIATPGHGPKENRGHLQFQSIPYNMHPGRSSRMETNVNSVIGDPSLKRLVVTEERPSVYSTFFPNLERAERMGIDPSKGVPNWAWQTNGQVNATPVPPFSTAASSGFSISATFPSTAIFPTKSMNPIPQSFCFTSHSTPGSNAPQFYYEVKSSQAPSQPLSCNTSINGSPPHKF* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0384 485 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 456 - -
Gso15g0384 485 MobiDBLite consensus disorder prediction 119 138 - -
Gso15g0384 485 SUPERFAMILY DNA-binding domain 228 288 IPR016177 GO:0003677
Gso15g0384 485 SMART rav1_2 229 292 IPR001471 GO:0003700|GO:0006355
Gso15g0384 485 SMART rav1_2 137 199 IPR001471 GO:0003700|GO:0006355
Gso15g0384 485 CDD AP2 137 193 IPR001471 GO:0003700|GO:0006355
Gso15g0384 485 CDD AP2 228 288 IPR001471 GO:0003700|GO:0006355
Gso15g0384 485 Gene3D AP2/ERF domain 136 195 IPR036955 GO:0003700|GO:0006355
Gso15g0384 485 Gene3D AP2/ERF domain 228 287 IPR036955 GO:0003700|GO:0006355
Gso15g0384 485 ProSiteProfiles AP2/ERF domain profile. 229 286 IPR001471 GO:0003700|GO:0006355
Gso15g0384 485 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR TOE2 1 456 - -
Gso15g0384 485 SUPERFAMILY DNA-binding domain 136 193 IPR016177 GO:0003677
Gso15g0384 485 Pfam AP2 domain 228 275 IPR001471 GO:0003700|GO:0006355
Gso15g0384 485 Pfam AP2 domain 137 185 IPR001471 GO:0003700|GO:0006355
Gso15g0384 485 ProSiteProfiles AP2/ERF domain profile. 137 193 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0384 Gso-Chr15 3518645 3523350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0384 113 312 AP2-EREBP Transcription Factor Family AT4G36920 77.340 2.85e-95 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Gso15g0384 AP2 5.3e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0384 K09284 - gmx:100796271 959.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0384 15 3518645 3523350 Gso11g3417 11 50087431 50091888 GST
Gso15g0384 15 3518645 3523350 Gso12g0602 12 5461644 5466026 PCT
Gso15g0384 15 3518645 3523350 Gso11g1241 11 11378917 11383276 PCT
Gso12g0602 12 5461644 5466026 Gso15g0384 15 3518645 3523350 PCT
Gso11g1241 11 11378917 11383276 Gso15g0384 15 3518645 3523350 PCT