Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0380 ATGGAGCAGTCAGAAAAATCGCCTAAAAAAACATCATCACTGAGATCATCATTTCCGAGAGATCCACGTGGCTCACTCGAAGTGTTTAACCCAAACACTTCAACTTCAACTTCAACCAACGTGTGCGTGCGTTCACAGCCTCTTTGGAAATCGTGGACGGAGTCGGAAGAACCGCGCCATGAAATCGCCGCAACGTCGTGGATGGCCATCAATCCGGCGGCTCCGTCTGCCGGAGAAAGAGGAGAGGCGGCGCAGAGGGCGGCGGAGTGGGGTCTGGTGCTCCGGACCGACACCGAAACCGGCAAGCCGCAGGGCGTGGAGGCGAGGAACTCCGGCGGCGAGGAACCTAACGCTGCGAAACTAGCCGCCGTTGCTTCGTCGTCCAGGAAGAACTCTCAGAACTCCGCCAGAAATTCCGGCGACTCTTCCGGCGGCGGCGGAGGGATTCCGAGAATATCGGAGGATGTGATGGGGGCTTTGTCGGCTTTTCAACAGACTTTCGTGGTTTCGGATGCTACCAAACCCGATTACCCGATCCTGTATGCGAGTGCCGGGTTCTTTAAAATGACAGGTTATACGTCCAAGGAAGTTATTGGGAGAAATTGCCGGTTTTTACAGGGTGCGGACACGGATCCCGAAGACGTAGCAAAGATAAGGGAAGCATTGCAAAGTGGGAAAATTTACTGCGGAAGGCTATTAAATTACAAGAAGGATGGGACACCTTTCTGGAACCTTCTCACTATTTCACCCATCAAGGATGAAGATGGCAAAGTGCTCAAATTTATTGGAATGCAAGTGGAGGTTAGCAAGCATACGGAGGGGTCCAAGGAGAAGATGCTACGTCCCAATGGATTGCCCGAATCCTTGATTCGATATGATGCACGGCAGAAAGAGAAGGCTACAAGTTCAGTAACTGAGTTGCTGCAGGCCATGAAACGCCCCCGAGCATTAAGTGAATCCGCAAGTCGTCCCTCCATCAGAAAATCAGGATCTAGATCTGCTGAGGAAGGAAAAAAACTACCACAAGAACAACAAGAAGAGGAAGACAAAGAGAAAGCACAACAAACATTAAGAAGAAAATCTGAGAGTGGAGCTTCATTTGGACGCAAATCAGAAGGAGGACATAGAATTTCAATAGAACGAATCAGTGAGCTGCCTGAAAGTAAACAGAAAAACTCTCAGCGCCGTTCTTTCATGGGATTCAGGAGGAAAAGTCAGTCCAATGATGAAAGCATGGATAATGAACTGATTGAGGATGTCAGCTCTGAGAGTGAGGATGATAAAGGGCCTGATAGTTTGGAATTAGATGACAAAGAAAAGCAAAGGGAAAAGCGAAAAGGTCTTGATCTTGCTACCACGCTTGAACGTATCGAGAAAAACTTTGTCATTACTGATCCAAGGCTTCCAGACAATCCTATAATCTTTGCATCGGATAGCTTCTTAGAGCTTACAGAATATAGCCGTGAAGAAATCTTGGGAAGGAACTGCAGGTTTCTGCAAGGACCTGAAACTGATCCGGCAACTGTGAGAAAAATTAGAGAGGCAATTGACAATCAAACAGAAGTTACCGTGCAACTGATCAATTATACAAAGAGTGGAAAGAAGTTCTGGAACCTGTTTCATTTGCAACCTATGCGTGACCAGAAGGGAGAAGTGCAGTATTTTATTGGTGTTCAACTTGATGGTAGTCAACATGTAGAGCCTCTTCACAACTGCATCGCAGAAGATACTGCAAAGGAGGGAGAACAGTTGGTCAAACAAACGGCAGAAAATGTTGATGAGGCGGTAAGAGATTTTCCGGATGCTAACAAGAAACCAGATGATTTATGGACAAATCATTCAAAAGCAGTTCACCCGAAACCTCATAGGAAGGATGACCCTGCATGGAAAGCTATCCAAAAGGTCCTAGAAAGTGGAGAACAGATAGGCTTAAAGCACTTTAGGCCAATTAAACCATTGGGGTCAGGAGATACTGGCAGCGTGCATCTGGTGGAGCTACGTGGAACTGGTCAATATTTTGCCATGAAGGCTATGGATAAGGGTGTTATGCTCAATCGTAACAAGGTGCATAGAGCTTGCGCAGAGAGAGAAATTCTTGACAAGTTGGACCACCCCTTTCTACCTGCATTATATGCTTCCTTTCAGACCAAAACACACGTTTGTTTGATAACTGATTATTGTCCTGGAGGAGAATTATTCCTGCTTCTTGACCGGCAACCAACTAAGGTTCTAAAGGAAGATGCCGTGAGATTTTATGCAGCTGAGGTAGTGATCGCATTGGAGTACCTTCATTGTCAAGGGATAATATATCGAGATTTGAAGCCAGAAAATGTGTTACTCAAGAGCAACGGGCATGTGTCTCTAACAGATTTTGATTTGTCATGTTTAACATTTAGCAAGCCACAGCTTATAATTCCAGCTACCAATTCAAAGAAGAAGAAAAAGAAGAAACAGAAAAGTCAAGAGGTTCCAATGTTTATGGCAGAACCAGTGAGAGCATCAAATTCTTTTGTTGGAACGGAAGAGTACATTGCTCCGGAAATTATAACTGGTTCAGGTCACACAAGTGCTGTGGATTGGTGGGCTCTAGGTATTCTAATATATGAAATGCTTTATGGGTATACGCCATTTCGGGGGAAGACAAGACAAAAAACATTTGCAAATATTCTTCACAAGGATCTTAAATTTCCCAAAAGTAAACCGGTAAGTCTCCAGGGAAAGCAGCTAATTTACTGGTTGTTGCAGAGAGATCCAAAAGACAGATTGGGTTCACGCGAAGGAGCAAATGAAATTAAACGTCATCCTTTCTTCCGGGGTGTCAATTGGGCACTAGTTCGTTGCATGAAACCTCCTGAGCTTGATGCTCCTCTCTTACCAGAAACTGAAGAAGAAAAAGAAGGCAAAGATATAGATCCTGGGCTAGAGGATCTACAGGCAAATGTTTTTTGA 2949 0.451 MEQSEKSPKKTSSLRSSFPRDPRGSLEVFNPNTSTSTSTNVCVRSQPLWKSWTESEEPRHEIAATSWMAINPAAPSAGERGEAAQRAAEWGLVLRTDTETGKPQGVEARNSGGEEPNAAKLAAVASSSRKNSQNSARNSGDSSGGGGGIPRISEDVMGALSAFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPEDVAKIREALQSGKIYCGRLLNYKKDGTPFWNLLTISPIKDEDGKVLKFIGMQVEVSKHTEGSKEKMLRPNGLPESLIRYDARQKEKATSSVTELLQAMKRPRALSESASRPSIRKSGSRSAEEGKKLPQEQQEEEDKEKAQQTLRRKSESGASFGRKSEGGHRISIERISELPESKQKNSQRRSFMGFRRKSQSNDESMDNELIEDVSSESEDDKGPDSLELDDKEKQREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLHNCIAEDTAKEGEQLVKQTAENVDEAVRDFPDANKKPDDLWTNHSKAVHPKPHRKDDPAWKAIQKVLESGEQIGLKHFRPIKPLGSGDTGSVHLVELRGTGQYFAMKAMDKGVMLNRNKVHRACAEREILDKLDHPFLPALYASFQTKTHVCLITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVIALEYLHCQGIIYRDLKPENVLLKSNGHVSLTDFDLSCLTFSKPQLIIPATNSKKKKKKKQKSQEVPMFMAEPVRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILIYEMLYGYTPFRGKTRQKTFANILHKDLKFPKSKPVSLQGKQLIYWLLQRDPKDRLGSREGANEIKRHPFFRGVNWALVRCMKPPELDAPLLPETEEEKEGKDIDPGLEDLQANVF* 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0380 982 MobiDBLite consensus disorder prediction 373 391 - -
Gso15g0380 982 ProSiteProfiles PAC domain profile. 520 574 IPR000700 -
Gso15g0380 982 SUPERFAMILY Protein kinase-like (PK-like) 630 956 IPR011009 -
Gso15g0380 982 ProSitePatterns Serine/Threonine protein kinases active-site signature. 768 780 IPR008271 GO:0004672|GO:0006468
Gso15g0380 982 CDD PAS 461 561 IPR000014 -
Gso15g0380 982 MobiDBLite consensus disorder prediction 329 366 - -
Gso15g0380 982 MobiDBLite consensus disorder prediction 959 982 - -
Gso15g0380 982 SMART serkin_6 647 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g0380 982 Pfam Protein kinase domain 649 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g0380 982 Gene3D PAS domain 435 599 - -
Gso15g0380 982 MobiDBLite consensus disorder prediction 27 41 - -
Gso15g0380 982 SUPERFAMILY PYP-like sensor domain (PAS domain) 462 561 IPR035965 -
Gso15g0380 982 CDD STKc_phototropin_like 645 960 - -
Gso15g0380 982 MobiDBLite consensus disorder prediction 124 142 - -
Gso15g0380 982 CDD PAS 179 268 IPR000014 -
Gso15g0380 982 Gene3D Transferase(Phosphotransferase) domain 1 731 960 - -
Gso15g0380 982 Coils Coil 343 363 - -
Gso15g0380 982 PANTHER PHOTOTROPIN-1 105 982 - -
Gso15g0380 982 ProSiteProfiles PAS repeat profile. 152 223 IPR000014 -
Gso15g0380 982 MobiDBLite consensus disorder prediction 601 625 - -
Gso15g0380 982 MobiDBLite consensus disorder prediction 94 151 - -
Gso15g0380 982 ProSiteProfiles PAC domain profile. 226 280 IPR000700 -
Gso15g0380 982 SMART pas_2 154 223 IPR000014 -
Gso15g0380 982 SMART pas_2 448 517 IPR000014 -
Gso15g0380 982 ProSitePatterns Protein kinases ATP-binding region signature. 653 676 IPR017441 GO:0005524
Gso15g0380 982 ProSiteProfiles PAS repeat profile. 446 519 IPR000014 -
Gso15g0380 982 SMART pac_2 229 271 IPR001610 -
Gso15g0380 982 SMART pac_2 523 565 IPR001610 -
Gso15g0380 982 MobiDBLite consensus disorder prediction 1 41 - -
Gso15g0380 982 Pfam PAS domain 469 561 IPR000014 -
Gso15g0380 982 Pfam PAS domain 173 269 IPR000014 -
Gso15g0380 982 Gene3D Phosphorylase Kinase; domain 1 646 967 - -
Gso15g0380 982 MobiDBLite consensus disorder prediction 309 446 - -
Gso15g0380 982 MobiDBLite consensus disorder prediction 426 446 - -
Gso15g0380 982 ProSiteProfiles Protein kinase domain profile. 647 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g0380 982 SUPERFAMILY PYP-like sensor domain (PAS domain) 173 265 IPR035965 -
Gso15g0380 982 TIGRFAM sensory_box: PAS domain S-box protein 179 272 IPR000014 -
Gso15g0380 982 TIGRFAM sensory_box: PAS domain S-box protein 471 561 IPR000014 -
Gso15g0380 982 MobiDBLite consensus disorder prediction 959 973 - -
Gso15g0380 982 Gene3D PAS domain 166 324 - -
Gso15g0380 982 PANTHER FLIPPASE KINASE 1-RELATED 105 982 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0380 Gso-Chr15 3426012 3441150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0380 1 982 AGC Kinase Gene Family AT3G45780 68.421 0.0 1340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Gso15g0380 Pkinase 2.4e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0380 K20715 - gmx:100776796 1882.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0380 15 3426012 3441150 Gso11g3422 11 50156780 50171722 GST
Gso15g0380 15 3426012 3441150 Gso12g0606 12 5577873 5598319 PCT
Gso15g0380 15 3426012 3441150 Gso11g1539 11 17916650 17920332 PCT
Gso12g0606 12 5577873 5598319 Gso15g0380 15 3426012 3441150 PCT
Gso11g1539 11 17916650 17920332 Gso15g0380 15 3426012 3441150 PCT