Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0360 ATGGTTCAACAGGAAGTGCGTAAAGGTCCTTGGACAGAACAGGAAGACTTCAAATTGGTGTCCTTTGTTGGCTTGTTTGGGGACCGTAGATGGGACTTTATAGCTAAGGTATCAGGTTTGAATAGAACAGGTAAGAGTTGCAGATTACGGTGGGTTAATTACCTACATCCTGGCCTCAAACGTGGAAAGATGACCCCCCAGGAAGAACGCCTTGTCTTGGAGCTTCACTCAAAATGGGGAAATAGGTGGTCAAGAATTGCTCGAAAGTTACCAGGGCGCACTGACAATGAGATCAAGAACTACTGGAGGACTCTGATGAGGAAAAAGGCTCAGGACAAAAAGCGAGGAGAAGCTGCATCATCATCATCATCTAGTGTTGATTCCTCAATATCCTCAAACAACCATGCGGTGGATCCACATGCTTCCAAGAAAGCAGGAGAAGAGAGCTTTTATGACACTGGAGGTCATGGTGTGACAGCCTCAACCCAAGATCAGGGTCAAAAAGGTGAACAAGGGTTGTTCTCTATGGATGATATATGGAAGGATATTGACAATATGTCAGAAGAGAACAACACTCTTCAGCCAGTTTATGAAGGGAACAGTGAAGAGGGTTGCAACTTCTCTTGCCCACCACAAGTGCCTTCTCCATCATCATGGGAATATTCTTCTGACCCTCTATGGGTGATGGATGAGGAAAGTTTGTTTTGCCCTTTGAGTGAACCATATTTTTCCTGCTATGCACAAGGCAGCGTTTTTTTAACCGGCTAA 768 0.4492 MVQQEVRKGPWTEQEDFKLVSFVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHSKWGNRWSRIARKLPGRTDNEIKNYWRTLMRKKAQDKKRGEAASSSSSSVDSSISSNNHAVDPHASKKAGEESFYDTGGHGVTASTQDQGQKGEQGLFSMDDIWKDIDNMSEENNTLQPVYEGNSEEGCNFSCPPQVPSPSSWEYSSDPLWVMDEESLFCPLSEPYFSCYAQGSVFLTG* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0360 255 Gene3D - 8 60 - -
Gso15g0360 255 SMART sant 7 57 IPR001005 -
Gso15g0360 255 SMART sant 60 108 IPR001005 -
Gso15g0360 255 MobiDBLite consensus disorder prediction 109 170 - -
Gso15g0360 255 Gene3D - 63 135 - -
Gso15g0360 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Gso15g0360 255 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 236 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gso15g0360 255 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Gso15g0360 255 CDD SANT 63 106 IPR001005 -
Gso15g0360 255 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Gso15g0360 255 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Gso15g0360 255 Pfam Myb-like DNA-binding domain 61 105 IPR001005 -
Gso15g0360 255 CDD SANT 10 55 IPR001005 -
Gso15g0360 255 PANTHER TRANSCRIPTION FACTOR MYB48-RELATED 3 236 - -
Gso15g0360 255 SUPERFAMILY Homeodomain-like 6 102 IPR009057 -
Gso15g0360 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Gso15g0360 255 MobiDBLite consensus disorder prediction 155 170 - -
Gso15g0360 255 MobiDBLite consensus disorder prediction 117 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0360 Gso-Chr15 3243440 3245072 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0360 1 232 MYB Transcription Factor Family AT5G59780 60.515 4.40e-85 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso15g0360 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0360 K09422 - gmx:100775900 395.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0360 15 3243440 3245072 Gso11g3445 11 50379084 50380710 GST
Gso12g0545 12 4888640 4890185 Gso15g0360 15 3243440 3245072 PCT
Gso11g1208 11 10938183 10939746 Gso15g0360 15 3243440 3245072 PCT