Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0348 ATGGAGAGTCACAGTACTGCAGAGGATGAGAGTGGAAGGAAAGGATCAAGTGGTGCTCATTCATCAGTTTCACGATGGAGTCCTACAAAGGAGCAAATAGACATGTTGGAGAACTTTTACAAGCAGGGAATAAGGACTCCCAGCACTGAGCAAATACAACAGATTACCTCTAGGCTTAGGGCTTATGGTTACATCGAGGGAAAAAATGTCTTCTACTGGTTTCAAAATCACAAAGCGCGCCAAAGACAGAAGCTCAAGCAGAAGCAACAAAGCATTGCATACTGCAATTGCTTTCTTCATGCCTCCCACCCCATTTGCCAAAATGTTGTCTGCGCCCCATATTGTTTGCAAAAGAGTGGATTCAGCTTTTATCCTCACCAACCAAAGGTGCTTGCAAGTGTAGGTATTAGCTCAAGGATTGAGACTGGGTCCTTTGGCATGCTAAGAATATGTGATGGCATGCAGAGTGAACACCCGGATTATAACTATAGCACCAGTAACCGTGAAGCCTTAACTCTATTTCCTCTTCATCCAACCGGTATTTTGGAAGAAAAAACAACTCATCACTCTGTTGATGTCACCGACAAATCTTTTGTTTCTATTGCTGTTGACGAAAATGGTCATCTTGGAAATCAACACTGCTTTAATTTTCAGTACTGA 660 0.4258 MESHSTAEDESGRKGSSGAHSSVSRWSPTKEQIDMLENFYKQGIRTPSTEQIQQITSRLRAYGYIEGKNVFYWFQNHKARQRQKLKQKQQSIAYCNCFLHASHPICQNVVCAPYCLQKSGFSFYPHQPKVLASVGISSRIETGSFGMLRICDGMQSEHPDYNYSTSNREALTLFPLHPTGILEEKTTHHSVDVTDKSFVSIAVDENGHLGNQHCFNFQY* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0348 219 SMART HOX_1 21 88 IPR001356 GO:0003677
Gso15g0348 219 Pfam Homeodomain 24 83 IPR001356 GO:0003677
Gso15g0348 219 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 8 217 IPR044555 GO:0003700|GO:0099402
Gso15g0348 219 MobiDBLite consensus disorder prediction 1 15 - -
Gso15g0348 219 SUPERFAMILY Homeodomain-like 24 89 IPR009057 -
Gso15g0348 219 ProSiteProfiles 'Homeobox' domain profile. 19 84 IPR001356 GO:0003677
Gso15g0348 219 MobiDBLite consensus disorder prediction 1 27 - -
Gso15g0348 219 PANTHER TRANSCRIPTION FACTOR HOMOBOX-WOX FAMILY-RELATED 8 217 - -
Gso15g0348 219 CDD homeodomain 25 79 IPR001356 GO:0003677
Gso15g0348 219 Gene3D - 18 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0348 Gso-Chr15 3147864 3149258 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0348 21 119 Wox Gene Family AT5G59340 65.714 1.39e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Gso15g0348 Homeodomain 1.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0348 - - gmx:100779632 441.039