Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0336 ATGGGAGTTTGTTTGAGCGCCCAAATTAAAGCTGAAAGCCCATATAACACTGGGTTCAATTCAAAGTATGTGAGTACGGATGGAAATGATTTCGGCAGCACAAACGATAAGGTTTCAGCAAACTCAATTCCTCAAACTCCTCGGAGTGAGGTTGAGATCTTGCGGTCATCCAATTTGAAGAGCTTTACCTTGTCAGAACTTAAGACGGCCACTAGAAATTTCCGTCCAGATAGCGTGTTAGGAGAAGGTGGTTTTGGATCAGTTTTTAAGGGGTGGATCGATGAGAATTCATTGACTGCTACCAAACCTGGCACTGGCATTGTTATTGCTGTTAAAAGACTTAATCAAGATGGCATCCAGGGTCACAGGGAGTGGTTGGCTGAAGTCAACTATCTTGGACAGCTTTCTCATCCTCATCTAGTGAGATTGATTGGGTTTTGCCTTGAAGATGAACATCGCCTTCTCGTCTACGAATTTATGCCACGTGGAAGCTTGGAAAACCATTTGTTCAGGAGAGGCTCATATTTTCAACCACTTTCTTGGAGCCTACGTTTGAAGGTAGCTCTTGATGCTGCCAAAGGGCTTGCATTTCTCCACAGTGCAGAAGCAAAAGTGATATATAGAGATTTTAAGACTTCAAATATCTTGCTGGATTCAGATGGACCAACAGGTGACCAAAGTCATGTCTCCACCAGGGTAATGGGAACCTACGGATACGCAGCACCTGAATATCTAGCCACAGGTCATCTTACTGCTAAGAGCGATGTCTATAGTTTTGGGGTTGTCCTGCTGGAAATGTTGTCTGGCAAGAGGGCTGTTGACAAGAATAGACCATCTGGACAACACAATTTGGTGGAATGGGCTAAACCTTACCTGGCAAACAAGCGTAAGATATTTCGTGTGTTGGACACCCGGCTCGAAGGACAATATTCAACAGATGATGCCTGTAAGCTAGCCACCCTTGCCTTGCGGTGCCTATCAATAGAATCCAAGTTCAGGCCAAACATGGATGAAGTGGTTACAACATTGGAGCAGCTGCAAGTTCCTAATGTAAATGGAGGCCATCAAAATGGGTCTCGTGTTCGTAGAAGAAGTGCTGATGTGAATAGAGGCTATCAAAATCCTTCTGTTAATGGATCTCGAGTTCGTAGAAGAAGTGCCGATGATATTAGCCCTATGGAGACTCCCACAGCTTATCCCCGGCCTTCTGCATCCCCTCTCTATACTTGA 1230 0.448 MGVCLSAQIKAESPYNTGFNSKYVSTDGNDFGSTNDKVSANSIPQTPRSEVEILRSSNLKSFTLSELKTATRNFRPDSVLGEGGFGSVFKGWIDENSLTATKPGTGIVIAVKRLNQDGIQGHREWLAEVNYLGQLSHPHLVRLIGFCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWSLRLKVALDAAKGLAFLHSAEAKVIYRDFKTSNILLDSDGPTGDQSHVSTRVMGTYGYAAPEYLATGHLTAKSDVYSFGVVLLEMLSGKRAVDKNRPSGQHNLVEWAKPYLANKRKIFRVLDTRLEGQYSTDDACKLATLALRCLSIESKFRPNMDEVVTTLEQLQVPNVNGGHQNGSRVRRRSADVNRGYQNPSVNGSRVRRRSADDISPMETPTAYPRPSASPLYT* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0336 409 ProSitePatterns Protein kinases ATP-binding region signature. 80 112 IPR017441 GO:0005524
Gso15g0336 409 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL11-RELATED 26 366 - -
Gso15g0336 409 PANTHER OS01G0588500 PROTEIN-RELATED 26 366 - -
Gso15g0336 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Gso15g0336 409 ProSiteProfiles Protein kinase domain profile. 74 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g0336 409 MobiDBLite consensus disorder prediction 348 409 - -
Gso15g0336 409 SUPERFAMILY Protein kinase-like (PK-like) 50 346 IPR011009 -
Gso15g0336 409 Gene3D Phosphorylase Kinase; domain 1 49 159 - -
Gso15g0336 409 Gene3D Transferase(Phosphotransferase) domain 1 160 360 - -
Gso15g0336 409 Pfam Protein tyrosine and serine/threonine kinase 78 343 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0336 Gso-Chr15 3018723 3021733 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0336 20 343 Glycoside Hydrolase AT3G07070 43.491 6.78e-92 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso15g0336 Pkinase 7.8e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0336 - - gmx:100798404 805.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0336 15 3018723 3021733 Gso11g3473 11 50638615 50641692 GST
Gso15g0336 15 3018723 3021733 Gso12g0520 12 4644824 4648457 PCT
Gso15g0336 15 3018723 3021733 Gso11g1181 11 10622478 10626055 PCT
Gso12g0520 12 4644824 4648457 Gso15g0336 15 3018723 3021733 PCT
Gso11g1181 11 10622478 10626055 Gso15g0336 15 3018723 3021733 PCT