Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0333 ATGGGTGTGTTCAGTGCAGTGCTGTGCCTTATGTCCCTAATGTGGATGGTGGAAGCTCGAATTCCAGGCGTTTACACGGGCGGCGCCTGGCAAAGTGCTCACGCTACATTCTACGGAGGATCCGATGCATCCGGCACCATGGGAGGAGCATGCGGGTACGGGAACCTGTACAGCCAAGGGTACGGAGTGAACACTGCAGCGTTGAGCACGGCACTCTTCAACAGCGGCCTCAGCTGCGGTGCGTGCTTTGAGATCAAATGCGCAAACGACAAGCAGTGGTGTCACTCCGGCAGCCCTTCCATCTTCATCACCGCCACCAACTTCTGTCCCTCAAATTACGCTCTTCCAAACGACAATGGCGGCTGGTGCAACCCCCCTCGCCCTCACTTCGACCTCGCCATGCCCATGTTCCTTAAAATCGCCGAATACCGCGCCGGCATCGTCCCTGTCGCCTACCGCAGGGTGGCATGTAGGAAGCATGGGGGGATCAGGTTCACAATAAACGGTTTCCGTTACTTTAACCTGGTTTTGATCAGCAACGTGGCGGGTGCAGGGGATATCGTGCACGCCTACGTTAAGGGGTCACGAACCGGGTGGATAGCAATGAGCAGAAACTGGGGTCAGAACTGGCAGTCAAACGCCGTTTTGGTGGGCCAGGCTTTGTCCTTCAGAGTTACCGCCAGTGACCGTCGCTCTTCTACCTCTTGGAACATTGTTCCACCAAATTGGCAATTTGCTCAAACTTTCACTGGAAAGAACTTCCGTGTCTGA 771 0.5538 MGVFSAVLCLMSLMWMVEARIPGVYTGGAWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNSGLSCGACFEIKCANDKQWCHSGSPSIFITATNFCPSNYALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVACRKHGGIRFTINGFRYFNLVLISNVAGAGDIVHAYVKGSRTGWIAMSRNWGQNWQSNAVLVGQALSFRVTASDRRSSTSWNIVPPNWQFAQTFTGKNFRV* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0333 256 PANTHER EXPANSIN 7 255 - -
Gso15g0333 256 SMART dpbb_1 65 152 IPR007112 -
Gso15g0333 256 Gene3D - 18 158 IPR036908 -
Gso15g0333 256 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 251 IPR007117 -
Gso15g0333 256 PANTHER EXPANSIN-A15 7 255 IPR002963 GO:0009664
Gso15g0333 256 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 162 IPR007112 -
Gso15g0333 256 SUPERFAMILY Barwin-like endoglucanases 29 180 IPR036908 -
Gso15g0333 256 Pfam Expansin C-terminal domain 163 240 IPR007117 -
Gso15g0333 256 SUPERFAMILY PHL pollen allergen 159 251 IPR036749 -
Gso15g0333 256 Pfam Lytic transglycolase 65 152 IPR009009 -
Gso15g0333 256 Gene3D - 162 254 IPR036749 -
Gso15g0333 256 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Gso15g0333 256 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Gso15g0333 256 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Gso15g0333 256 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Gso15g0333 256 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Gso15g0333 256 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Gso15g0333 256 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Gso15g0333 256 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Gso15g0333 256 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Gso15g0333 256 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Gso15g0333 256 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Gso15g0333 256 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Gso15g0333 256 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Gso15g0333 256 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Gso15g0333 256 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0333 Gso-Chr15 2996939 2998468 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0333 13 256 Expansin Gene Family AT2G39700 84.836 2.75e-159 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0333 - - gmx:100791522 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0333 15 2996939 2998468 Gso11g3476 11 50660365 50661691 GST
Gso15g0333 15 2996939 2998468 Gso12g0518 12 4628895 4631453 PCT
Gso15g0333 15 2996939 2998468 Gso11g1179 11 10605687 10608145 PCT
Gso12g0518 12 4628895 4631453 Gso15g0333 15 2996939 2998468 PCT
Gso11g1179 11 10605687 10608145 Gso15g0333 15 2996939 2998468 PCT