Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0306 ATGAGGAAGCCAGAGGCGAGTAATAATAATACTAAAAACAACAACAACAATAGCAAGAAGCTTAGAAAGGGGTTGTGGTCACCTGAAGAAGATGACAAGCTCATGAACTACATGCTAAACCATGGACAAGGGTGTTGGAGCGATGTGGCAAGAAATGCTGGCCTCCAAAGGTGTGGCAAAAGTTGTCGCCTTCGATGGATCAATTACTTGAGGCCTGATCTTAAGAGAGGTGCATTCTCACCCCAAGAAGAGGAACTCATCATCCACTTCCATTCCCTTCTTGGAAACAGATGGTCTCAAATAGCGGCGCGTTTGCCTGGGCGAACCGACAATGAAATAAAAAACTTTTGGAATTCGACGATAAAGAAAAGACTCAGGAATATGTCTTCCACGACCACCACAACCTCACCCTCACCCTCATCAAATGCAAGCGAGACCTCAATATCCGAGCCTAGTAATAAAGACCTCAACATGGGAGGGTTTATTTCCACACAACATAATCAACACGCAGGCTTTGTTCCTATGTTCGGTTCATCTCCATCACCATCAATAATGCAAACCGGTACAGTTTTCAATACCTTGATTGACAGATTGCCTATGCTGGAGCATGGACTAAACATGCCAGCTTCTGGAGGGTACTTCGAAGGCACAGGTATTCCTTGCTTTTCGCAAAGTGAAGTTAACAAATTAGGTTCTTGTTATTTAGAAAACGGAGTATTTGGGAGAAGTGTAAATATCGGGGTAGAAGGGGATATGTTTGTTCCTCCCCTAGAGAATGCTACATGCAGCAGGAGAGAAACAACTAACAGCAGTTACTTTGACGATGACATAAATAGTATTCTTAATAACTGCAACATTGGCATAGGTGAAAATAAGGCTCATGATGGGGTGGAGAATTTGTTTCAACAAGAGTTAGCCACTGCCACTGCCACAGGAGAATGGGACTTTGAGGAGTTGATGAAATTAGATGTTTCCTCCTTTCCGTTTCTTGATTTTTCATACTGA 1005 0.4289 MRKPEASNNNTKNNNNNSKKLRKGLWSPEEDDKLMNYMLNHGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHFHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLRNMSSTTTTTSPSPSSNASETSISEPSNKDLNMGGFISTQHNQHAGFVPMFGSSPSPSIMQTGTVFNTLIDRLPMLEHGLNMPASGGYFEGTGIPCFSQSEVNKLGSCYLENGVFGRSVNIGVEGDMFVPPLENATCSRRETTNSSYFDDDINSILNNCNIGIGENKAHDGVENLFQQELATATATGEWDFEELMKLDVSSFPFLDFSY* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0306 334 CDD SANT 26 70 IPR001005 -
Gso15g0306 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 125 IPR017930 -
Gso15g0306 334 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Gso15g0306 334 Pfam Myb-like DNA-binding domain 76 119 IPR001005 -
Gso15g0306 334 PANTHER MYB TRANSCRIPTION FACTOR 1 334 - -
Gso15g0306 334 Gene3D - 77 150 - -
Gso15g0306 334 SUPERFAMILY Homeodomain-like 21 117 IPR009057 -
Gso15g0306 334 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Gso15g0306 334 MobiDBLite consensus disorder prediction 127 160 - -
Gso15g0306 334 PANTHER MYB DOMAIN PROTEIN 55 1 334 - -
Gso15g0306 334 MobiDBLite consensus disorder prediction 1 24 - -
Gso15g0306 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 70 IPR017930 -
Gso15g0306 334 ProSiteProfiles Myb-like domain profile. 18 70 IPR001005 -
Gso15g0306 334 CDD SANT 78 118 IPR001005 -
Gso15g0306 334 Gene3D - 20 76 - -
Gso15g0306 334 MobiDBLite consensus disorder prediction 7 22 - -
Gso15g0306 334 SMART sant 75 123 IPR001005 -
Gso15g0306 334 SMART sant 22 72 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0306 Gso-Chr15 2779033 2782043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0306 1 329 MYB Transcription Factor Family AT5G12870 47.576 2.04e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso15g0306 Myb_DNA-binding 2.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0306 K09422 - gmx:778041 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0306 15 2779033 2782043 Gso11g3499 11 50856650 50859489 GST
Gso15g0306 15 2779033 2782043 Gso12g0478 12 4264209 4267082 PCT
Gso15g0306 15 2779033 2782043 Gso11g1136 11 10235755 10238401 PCT
Gso12g0478 12 4264209 4267082 Gso15g0306 15 2779033 2782043 PCT
Gso11g1136 11 10235755 10238401 Gso15g0306 15 2779033 2782043 PCT