Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0304 ATGGCTGCAACTCCTTCCAAATTCCTTCAAACTCCCTCCAAACCCAAACTCCGATCCCAATCCAATCCCAAATCCTCGCCGGTTGTAACCCCCGACACTCCACAAACCCTATATCCTCGCAGATCCACGCGCGCCAAGTCCCTCCTCTTCGATGCTCCCAAGCCTCCCCACACACCGCTCGAAATCTCGCTCACAACTCCGAAGCGGAGGATACGACGATCCATCGATTGTGTCGATCAGGATTCCGGCGAAGATAAAGCCACAACCAGCAAAATTTCAGATAAAAATAAAGCTCCGGTCGTCGATGCGTCAAAGAAGAAGAAGAATGGGAAGAACTCAATTGAAGTTTCCTTTGCTCCGGTAACACCGGCTTCATCGGAAAAGGCATCCACGAGGAAGAGGGAGGGTGAGGGGGGTGTTGTTACCAGAGCTAAAAGAAGGAAATCGGAGAATCGTGAAAAGAGTGCAAAACTGCCTCAGAGGCGCGTGTATTACACAAAGGTGGTTTATGATGGAGGTGAGTTTGAATTGGGGGATGATGTTTATGTGAAGAGGAGAGAAGATGCTAGCTCCGATGACGAAGATCCCGAAATGGAGGAGTGTAGGATGTGTTTTTCCTCAAACGATGAGGTCATGATTGAGTGTGACGATTGTTTGGGTGGGTTTCATTTGAAATGCTTGAGGCCTCCATTGAAGGATGTTCCTGAAGGGGATTGGATCTGTGGGTTCTGCGAGGCTCGTAAGATGGGTATGGAAGTTCAGTTACCAAAGCCTCCAAAGGGTAAGAAACTAGTTAGGACTATGAGGGAGAAGCTCCTTTCCAGTGATTTGTGGTCTGGTCGTATTAAAAGCATATGGAGAGAGGTGGATGACAACTATTGGTGTCGGGTGCGCTGGTATACAATCCCAGAAGAGACTTCTGTTGGGCGGCAACCTCATAACCTGAGGAGGGAGCTATATCGAACTAATGATTTTGCTGACATTGAGATGGAATCTGTCCTTAGACATTGCCATGTCATGACCCCCAAAGAATATGCTAAAGCTAGCGATGAGGGAGATGATGTTTTCTTATGTGAATATGAGTATGACATCCATTGGCACAGTTTCAAACGTCTTGCTGATATTGACAATGAAACAGAGAATGGTGAAGAGCATGACAGTGACGAAGACTGGAATGTTGACAAGGAATCAGACTCTGACACAGATGAAGATGTTGAATACGAAAAAGAAAATATTAAAAATACACAATCTAAGCCATCAACAAGCCATCACTTAGCTGCAAATCTGCAGAAGGGACAGTTCTTTGGACTTCAAAAGATAGGCACAAAAACAATTCCACAGCATGTAAGATCGCACAAACAGACTGATCTTGAGAGAGCAAAGGCTACACTGTTGTTAGCGTCACTGCCAAAATCTTTACCTTGTAGAAATAAAGAAATGGAGGAGATAACTGCATTCATCAATGGTGCTCTTTCTGACAATCAATGTCTGGGACGTTGCCTCTACATTCATGGTGTTCCGGGAACTGGCAAGACAATGAGTGTACTATCAGTAATGAGAAGCTTGAAGTCAGAAGTTGATGCAGGAAACATCAAACCGTACACTTTTGTGGAGATTAATGGTCTGAAATTGGCATCACCCGAGAATATTTACAAGGTTATTTATGAGGCACTAAATGGCCACAGGGTCAGCTGGAAAAAGGCTCTCCACTTGCTAAATGAGAGATTTGTAGAAGGAAAGAAAACCAGAGATGAGGCTGACCGGCCATGTATTTTGCTTATTGATGAACTTGATCTTCTAGTAACCAGAAACCAGTCGGTTCTGTACAATATTCTTGACTGGCCTACTAAGCCACATTCCAAGCTAATTGTCATAGGGATAGCAAATACTATGGATCTTCCAGAGAAGTTACTTCCTCGTATATCAAGCCGAATGGGCATACAGAGGCTTTGCTTTGGCCCATATAATTATCAGCAGCTTCAAGAAATCATTTCAAGTCGCCTCAAGGGAATTGATGTATTTGAAAAGCAAGCTGTAGAATTTGCTTCAAGAAAGGTTGCAGCAATCTCTGGAGATGCACGTCGTGCTTTGGAGATATGCAGACGTGCAGCTGAAATAGCAGATTATCGTATGAAGAAGCTAATTTCTAATCCTGATTGTGTTACTGCAGGAAAGGGACTTGTTGGAATGGTAGATGTTGAAGCAGCCATTCAAGAAATGTTCCAAGCACCTCATATTCAAATGATGAAAAGCTGTTCCAGAGTTAGCAAAATTTTATTGACAGCAATGGTGCACGAGCTTTATAATACAGGAATGGGGGAAACCACTTTTGAAAAGTTGGCTATGAGGGTTTCATGCTTCTGTACCAGCAACGGAGAAGTGTTTCCTGGGTATGATACGCTCCTGCAAGTTGGCTGTAGGCTTGGTGAATGCAGGATTATTTTATGTGAAGCAGGTGCCAAGCACAGGTGGCAAAAATTGCAGCTTAATTTCCCGAGTGATGATGTTGCCTTTGCGCTGAGAGACTGCAAAGATCTGCCTTGGCTGTCAAAGTATCTAATGTAG 2565 0.4405 MAATPSKFLQTPSKPKLRSQSNPKSSPVVTPDTPQTLYPRRSTRAKSLLFDAPKPPHTPLEISLTTPKRRIRRSIDCVDQDSGEDKATTSKISDKNKAPVVDASKKKKNGKNSIEVSFAPVTPASSEKASTRKREGEGGVVTRAKRRKSENREKSAKLPQRRVYYTKVVYDGGEFELGDDVYVKRREDASSDDEDPEMEECRMCFSSNDEVMIECDDCLGGFHLKCLRPPLKDVPEGDWICGFCEARKMGMEVQLPKPPKGKKLVRTMREKLLSSDLWSGRIKSIWREVDDNYWCRVRWYTIPEETSVGRQPHNLRRELYRTNDFADIEMESVLRHCHVMTPKEYAKASDEGDDVFLCEYEYDIHWHSFKRLADIDNETENGEEHDSDEDWNVDKESDSDTDEDVEYEKENIKNTQSKPSTSHHLAANLQKGQFFGLQKIGTKTIPQHVRSHKQTDLERAKATLLLASLPKSLPCRNKEMEEITAFINGALSDNQCLGRCLYIHGVPGTGKTMSVLSVMRSLKSEVDAGNIKPYTFVEINGLKLASPENIYKVIYEALNGHRVSWKKALHLLNERFVEGKKTRDEADRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFGPYNYQQLQEIISSRLKGIDVFEKQAVEFASRKVAAISGDARRALEICRRAAEIADYRMKKLISNPDCVTAGKGLVGMVDVEAAIQEMFQAPHIQMMKSCSRVSKILLTAMVHELYNTGMGETTFEKLAMRVSCFCTSNGEVFPGYDTLLQVGCRLGECRIILCEAGAKHRWQKLQLNFPSDDVAFALRDCKDLPWLSKYLM* 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0304 854 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 261 IPR013083 -
Gso15g0304 854 Pfam AAA lid domain 675 708 IPR041083 -
Gso15g0304 854 Pfam ATPase family associated with various cellular activities (AAA) 502 647 IPR003959 GO:0005524|GO:0016887
Gso15g0304 854 MobiDBLite consensus disorder prediction 1 42 - -
Gso15g0304 854 Gene3D - 142 390 IPR043151 -
Gso15g0304 854 SUPERFAMILY FYVE/PHD zinc finger 188 251 IPR011011 -
Gso15g0304 854 MobiDBLite consensus disorder prediction 128 157 - -
Gso15g0304 854 SMART PHD_3 200 245 IPR001965 -
Gso15g0304 854 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 133 849 - -
Gso15g0304 854 SMART BAH_4 232 373 IPR001025 GO:0003682
Gso15g0304 854 CDD AAA 478 654 - -
Gso15g0304 854 Gene3D - 453 648 IPR027417 -
Gso15g0304 854 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 1 133 849 IPR020793 -
Gso15g0304 854 ProSiteProfiles BAH domain profile. 257 373 IPR001025 GO:0003682
Gso15g0304 854 Gene3D - 649 739 - -
Gso15g0304 854 Pfam BAH domain 281 370 IPR001025 GO:0003682
Gso15g0304 854 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 467 717 IPR027417 -
Gso15g0304 854 SMART AAA_5 497 651 IPR003593 -
Gso15g0304 854 MobiDBLite consensus disorder prediction 379 424 - -
Gso15g0304 854 ProSitePatterns Zinc finger PHD-type signature. 201 244 IPR019786 -
Gso15g0304 854 ProSiteProfiles Zinc finger PHD-type profile. 198 247 IPR019787 -
Gso15g0304 854 MobiDBLite consensus disorder prediction 379 405 - -
Gso15g0304 854 Pfam PHD-finger 201 246 IPR019787 -
Gso15g0304 854 MobiDBLite consensus disorder prediction 66 112 - -
Gso15g0304 854 MobiDBLite consensus disorder prediction 1 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0304 Gso-Chr15 2755576 2762642 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0304 10 853 Core DNA Replication Machinery Family AT4G14700 62.222 0.0 1021
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso15g0304 AAA 2.1e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0304 K02603 - gmx:100814940 1739.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0304 15 2755576 2762642 Gso11g3501 11 50875149 50882499 GST