Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0303 ATGTTTCGCGCCCATTACCCTTCCGTTCGCGGCGCCAAAGTCGTCAGCGACCCCAACACCGGCCGCTCCAAGGGTTACGGTTTCGTTAAGTTTTCTGATGAGAATGAACGGAACCGGGCCATGACTGAAATGAACGGCGTTTATTGCTCCACCAGGCCCATGCGAATTAGTGCCGCTACGCCGAAGAAGACCACCAGTGTTTATGCTGCACCCGCCGCGCCTGTGCCGAAACCGGTGTATCCGGTTCCGGCCTACACTGCGCCGGTTGTTCAAGTTCAACCACCGGAGTATGATGTCAATAATACTGCCATTTTTGTCGGTAATTTGGATCTTAATGTGTCAGAGGAGGAGCTGAAGCAAAACTTTCTGCAATTTGGGGAAATTGTCTCTGTCAAAGTTCAGTCTGGCAAGGGATGTGGTTTTGTTCAATTTGGGACCAGCAGAGCATCTGCTGAAGAAGCCATTCAGAAGATGCAGGAAAAGATGATAGGTCAACAAGTGGTCCGGATTTCATGGGGTAGGACTCTAACAGCTAGACAGGACTTACCTGGTGGCTGGGGACCACAGATGGATCCAAATCAATGGAGTGCCTATTATGGGTATGGACAGGGTTATGAAGCCTATGCTTATGGGGCTGCTCATGATCCCTCATTTTATGCATATGGTGCATATGCTGGCTATGCACAATACCCCCAACAGGTTGAAGGTGCTCAAGACCTATCGGGTATGTCTGTGCCTACCATGGAACAAAGGGAGGAATTGTATGATCCCTTGGCAATGCCTGATGTTGATAAGTTAAATGCTGCATACCTCTCAGTACATGGAAGTGCCATTTTAGGGCGGTTGCCCTGGCAAAAAACCTGTTCGCCATCCTTACAGCAAGCTTAA 888 0.4944 MFRAHYPSVRGAKVVSDPNTGRSKGYGFVKFSDENERNRAMTEMNGVYCSTRPMRISAATPKKTTSVYAAPAAPVPKPVYPVPAYTAPVVQVQPPEYDVNNTAIFVGNLDLNVSEEELKQNFLQFGEIVSVKVQSGKGCGFVQFGTSRASAEEAIQKMQEKMIGQQVVRISWGRTLTARQDLPGGWGPQMDPNQWSAYYGYGQGYEAYAYGAAHDPSFYAYGAYAGYAQYPQQVEGAQDLSGMSVPTMEQREELYDPLAMPDVDKLNAAYLSVHGSAILGRLPWQKTCSPSLQQA* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0303 295 SUPERFAMILY RNA-binding domain, RBD 5 65 IPR035979 GO:0003676
Gso15g0303 295 Gene3D - 1 72 IPR012677 -
Gso15g0303 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 49 IPR000504 GO:0003723
Gso15g0303 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 104 168 IPR000504 GO:0003723
Gso15g0303 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 175 IPR000504 GO:0003723
Gso15g0303 295 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED 2 233 - -
Gso15g0303 295 SMART rrm1_1 1 57 IPR000504 GO:0003723
Gso15g0303 295 SMART rrm1_1 103 171 IPR000504 GO:0003723
Gso15g0303 295 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 2 233 - -
Gso15g0303 295 Gene3D - 90 180 IPR012677 -
Gso15g0303 295 SUPERFAMILY RNA-binding domain, RBD 81 204 IPR035979 GO:0003676
Gso15g0303 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 61 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0303 Gso-Chr15 2752536 2754725 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0303 14 175 Eukaryotic Initiation Factors Gene Family AT1G34140 27.545 1.58e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0303 - - gmx:100818294 528.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0303 15 2752536 2754725 Gso11g3502 11 50884915 50887763 GST
Gso15g0303 15 2752536 2754725 Gso12g0474 12 4228383 4231828 PCT
Gso15g0303 15 2752536 2754725 Gso11g1131 11 10197931 10201564 PCT
Gso12g0474 12 4228383 4231828 Gso15g0303 15 2752536 2754725 PCT
Gso11g1131 11 10197931 10201564 Gso15g0303 15 2752536 2754725 PCT