Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0258 ATGCCGCCTCCTTCGAAATCCGTGGAAGGCGAGGAGTGGGGAACCCCCACCAACAACCTCTGGGTCGGGAATCTGCCGACGGAGGTCACAGATTCCGATCTCATGGAACTATTCGCTCCGTACGGTTCTCTGGACTCACTCATCTCCTACTCCTCGCGCACCTTCGCTTTCGTCTTGTTCAGGCGCATCGAAGACGCTAAGGCAGCGAAATCCAACTTGCAAGGCGCGTTGCTGCGCGGGTTTCAAATCAGAATCGAGTTTGCCAGACCGGCAAAGCCGTGCAAACAATTGTGGGTGGGTGGTTTTAGTCCCACTGTTGCAAGGGAAGATTTGGAAGCGGAATTTCGCAAATTCGGTAAGATTGAGGATTTTAAGTTCTTTATAGACCGCGGCACTGCGTGTGTTGAGTTTCTCAATCTGGATGCTGCTGCTCGGGCGATGAAAGTCATGAACGGGAAGCGGTTAGGTGGACGCCAGATTTGTGTAGATTTCCTTCGATCACAATCTACGAGAAGAGATTTTTTGGTTGATCATGGGCAGTTTCAGGCTAGACCACAGCATTTACAACCTTCAATTGGGAGGAATAATCAACCCAGTAAAATCTTGTGGATAGGTTTTCCTCCTTCCTTTCAAATTGATGAACAAATGCTCCACAATGCCATGATTTTATTTGGTGAAATTGAGAAAATCAAGAGTTTTCCTTCTAGACATTATTCATTTGTTGAATTTAGAAGCATTGATGAAGCTCGGCGTGCCAAAGAGGGTCTTCAAGGACGGCTTTTTAATGATCCTCAAATAACAATTATGTATTCAAGCAGTGAGCTGGCACCTGGAAAAGATTACCCTGGCTTTTATCCTGGAGGTAAAGGCCCCATACCTGATGGATTAGGTAATGAGCATCCATTTCGACCGCTACAAACAGATGTATTTGGTCATAATCGTCCTATGGTTCCAAATAATTTTCCTGGACAATTGCCACCTGGACATAATGTCCCAATGCGACCTTTTGGTTCTCAAGGTCTTGAACCTCTTATCTCTGGTCCTGATTTTAATGAGATGGGTCCAAGCTGGAAAAGGCCATCTCCTCCTGCCCCAGGAATGCTTCCTTCTCCTGTGCCTGGTATTAGGCCTCCTACAAGATCCACCTCCGGTGCATGGGATCTACTTGACATAAACCAATTTCAGAGAGATTCTAAACGTTTGAGGATAGATGATGCTTTGTTCATTGGTGATGCTCCATTTCCTTTAAGGAATATAGATGATCGTGGATTAGGAGTAGAACAGCCATTTGCAATTGATTCAGTTATTGATGGAGGTGGTTCTGGTCCAAAAAGTCACCTTGGTCCAGTCGGCACTAGGATCACATCTGGAGTACCTGGTTCTGTCCAACCTGATATTGATCATATATGGCGTGGAATTATTGCAAAAGGGGGAACTCCTGTTTGTCGTGCTAGATGTGTGCCTATTGGGAAAGGGATAGTGACTGAGATTCCTGATATTGTAGATTGTGCTGCCAGGACTGGATTGGATATGCTAACAAAACACTATGCTGATGCAATTGGTTTTGACATTGTTTTCTTTCTCCCTGATAGCGAAGAGGATTTTGCTTCATACACTGAATTCCTTTGCTACCTCAAAGCAAAAAATCGTGCTGGTGTTGCCAAGTTTGTTGATAACACCACTTTATTTTTGGTACCACCTTCTGATTTCTTGACCAAGGTTTTGAAAGTCACAGGACCTGAACGCTTATATGGTGTGGTTCTTAAATTTCCATTAGTTCCAAGTAGCACATCTATGCAACAACCAATGCATTTGCCTTCTCCCTCTACTCAGTATATGCAACGGATTCCTCCTTCACAAGCTGAATATGGTTCAATATTGGTAAAGGAGGAACAGGTTTTACCAATGGATTATAACAGATTGTTGCATGAGGATTCTAAGCATCTGCCAAAACCACTTCATCCAGCTACAAATGTCCCCCCTTCAGCTCATTCTGTTCCTTCTGATTTTGCTCCTACTTATACTGCTTCTGCATCCCAAGCTGTTACATGGACACCTGAACTTATTGCAAGTTTAACTTCTTTACTCCCTGCAACTACGCAATCATCAACCACGGGTGGCCCAATGGCAGTGGCTGGTCCCTCTATTGTGAAGCCATCTTTTCCTTCTGTTGCACCTAATGATGGAAATCAATCTCATTTGTGGAAACAAGCTCAGCAAATCCCTGATCCTTCTAGTCATCCTCCTCAACAATTTGGGAGTATTCATAATGTTCAATATCAACCTTATCCACCTGCATCTTCTACTGACCACCCTGCTCAAGTGGTCTCTGGCAGTTCTTGTTTCCAAGATACCAATTCCAGTCTCCAGCAGCCAGTTGCTGTTTCGTCTACACCCATGACTAATTTCATCTTACCTCCTCAAAATGGACAGGTAGCTGTGTCCCCTCAAGTCAGTCAACAGTATCAGGTGGAAGTCCCCCATGGCACTGAGAAAGACTATGGAGTTGTTCAGGGAACAGATGCCTCTGTTTTATATAGTTCTAAGGCGTTCCAACAACCTAATAATTTTATTTCCTCATCCAATCAAGTTGCCAATGCTGCATCACAGCAACAATCTGTGATGCCCTTTACAGTGGACAAAGATAATTCAGTGCCCACAAATCAGCAACCTCAACCTGCTTTATTTGGAGTTGGCCAGGGAGTGTCAGAATTGGAGGCTGATAAGAACCAGAGGTACCAGTCAACACTACAGTTTGCTGCCAACCTTCTCCAGCAGATACAACAACAGCAAACACAAGGAGGGCATGGGCCAGGAAATCAACAATAA 2829 0.4447 MPPPSKSVEGEEWGTPTNNLWVGNLPTEVTDSDLMELFAPYGSLDSLISYSSRTFAFVLFRRIEDAKAAKSNLQGALLRGFQIRIEFARPAKPCKQLWVGGFSPTVAREDLEAEFRKFGKIEDFKFFIDRGTACVEFLNLDAAARAMKVMNGKRLGGRQICVDFLRSQSTRRDFLVDHGQFQARPQHLQPSIGRNNQPSKILWIGFPPSFQIDEQMLHNAMILFGEIEKIKSFPSRHYSFVEFRSIDEARRAKEGLQGRLFNDPQITIMYSSSELAPGKDYPGFYPGGKGPIPDGLGNEHPFRPLQTDVFGHNRPMVPNNFPGQLPPGHNVPMRPFGSQGLEPLISGPDFNEMGPSWKRPSPPAPGMLPSPVPGIRPPTRSTSGAWDLLDINQFQRDSKRLRIDDALFIGDAPFPLRNIDDRGLGVEQPFAIDSVIDGGGSGPKSHLGPVGTRITSGVPGSVQPDIDHIWRGIIAKGGTPVCRARCVPIGKGIVTEIPDIVDCAARTGLDMLTKHYADAIGFDIVFFLPDSEEDFASYTEFLCYLKAKNRAGVAKFVDNTTLFLVPPSDFLTKVLKVTGPERLYGVVLKFPLVPSSTSMQQPMHLPSPSTQYMQRIPPSQAEYGSILVKEEQVLPMDYNRLLHEDSKHLPKPLHPATNVPPSAHSVPSDFAPTYTASASQAVTWTPELIASLTSLLPATTQSSTTGGPMAVAGPSIVKPSFPSVAPNDGNQSHLWKQAQQIPDPSSHPPQQFGSIHNVQYQPYPPASSTDHPAQVVSGSSCFQDTNSSLQQPVAVSSTPMTNFILPPQNGQVAVSPQVSQQYQVEVPHGTEKDYGVVQGTDASVLYSSKAFQQPNNFISSSNQVANAASQQQSVMPFTVDKDNSVPTNQQPQPALFGVGQGVSELEADKNQRYQSTLQFAANLLQQIQQQQTQGGHGPGNQQ* 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0258 942 Gene3D - 94 194 IPR012677 -
Gso15g0258 942 Coils Coil 910 930 - -
Gso15g0258 942 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 7 942 - -
Gso15g0258 942 MobiDBLite consensus disorder prediction 720 759 - -
Gso15g0258 942 SUPERFAMILY RNA-binding domain, RBD 11 92 IPR035979 GO:0003676
Gso15g0258 942 PANTHER RNA RECOGNITION MOTIF-CONTAINING 7 942 - -
Gso15g0258 942 CDD RRM3_Spen 97 166 - -
Gso15g0258 942 Gene3D - 195 277 IPR012677 -
Gso15g0258 942 SUPERFAMILY RNA-binding domain, RBD 94 270 IPR035979 GO:0003676
Gso15g0258 942 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 273 IPR000504 GO:0003723
Gso15g0258 942 MobiDBLite consensus disorder prediction 883 909 - -
Gso15g0258 942 Gene3D - 2 93 IPR012677 -
Gso15g0258 942 MobiDBLite consensus disorder prediction 724 759 - -
Gso15g0258 942 SMART rrm1_1 96 163 IPR000504 GO:0003723
Gso15g0258 942 SMART rrm1_1 201 269 IPR000504 GO:0003723
Gso15g0258 942 SMART rrm1_1 19 86 IPR000504 GO:0003723
Gso15g0258 942 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 167 IPR000504 GO:0003723
Gso15g0258 942 CDD RRM3_Spen 20 89 - -
Gso15g0258 942 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 90 IPR000504 GO:0003723
Gso15g0258 942 Pfam SPOC domain 464 581 IPR012921 -
Gso15g0258 942 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 160 IPR000504 GO:0003723
Gso15g0258 942 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 266 IPR000504 GO:0003723
Gso15g0258 942 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 84 IPR000504 GO:0003723
Gso15g0258 942 CDD RRM3_Spen 202 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0258 Gso-Chr15 2345415 2356692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0258 2 265 Eukaryotic Initiation Factors Gene Family AT4G34110 25.606 2.59e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0258 - - gmx:100806555 1863.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0258 15 2345415 2356692 Gso11g3547 11 51250454 51262194 GST
Gso15g0258 15 2345415 2356692 Gso12g0425 12 3707617 3719568 PCT
Gso15g0258 15 2345415 2356692 Gso11g1077 11 9623671 9634980 PCT
Gso12g0425 12 3707617 3719568 Gso15g0258 15 2345415 2356692 PCT
Gso11g1077 11 9623671 9634980 Gso15g0258 15 2345415 2356692 PCT