Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0253 ATGGACATAAGTCCTTACACTACTCCAAAGAAGCTATCACCACACTCCAATAACCATAACAACATCATTGCCGATGAGGCTGCAGCGTTATTAGATCACAACAACATGCACCGCAGCAACCACAGCCACACTTCCACGAGCCGTTCCTCGGACTCAAGTGAGCCTAGTGAAGACGGTAAATGGGCACCCAAACTTCTCAGAGAGTGTGCAAAAGCAATATCCGAGAGAGACTCAAGCAAAACGCACCATCATCTTTGGATGCTTAACGAGCTTGCTTCGCCTTATGGGGATTGTGATCAGAAACTCGCCTCTTATTTCTTGCAAGCGTTGTTCTGCAGAGCCACTGAGTCTGGTGAGAGGTGCTATAAAACTCTTTCCTCCGTGGCTGAGAAGAACCACTCGTTTGACTCGGCCATGAGGTTGATACTCAAGTTTCAAGAGGTGAGCCCTTGGACAACTTTTGGACACGTGGCGTCGAACGGCGCCATCTTGGAGGCCTTGGAAGGGGAGCCAAAGCTCCACATCATCGACCTCAGCAACACGCTGTGCACGCAGTGGCCAACGCTACTCGAAGCCTTGGCCACGCGAAACGATGAGACACCTCATCTTAAGCTCACAGTGGTCGCGATAGCGGGGTCGGTGATGAAGGAGATTGGTCAACGGATGGAGAAGTTTGCAAGACTCATGGGCGTGCCCTTTGAATTCAACGTGATTAGTGGATTAAGCCAAATCACCAAAGAAGGTTTGGGGGTTCAAGAAGATGAAGCTATAGCTGTGAACTGCGTTGGAACATTGAGAAGAGTGGAAATTGAAGAGAGGGAAAACTTGATTCGTGTTTTCAAGTCTCTTGGTCCTAAAGTGGTAACCGTTGTCGAGGAAGAAGCTGATTTTTGTAGCTCCAGGGAGAATTTTGTTAAGTGCTTTGAAGAGTGTCTCAAGTTCTACACACTCTACTTCGAGATGTTGGAGGAGAGTTTCCCTCCCACTAGCAACGAGAGGTTGATGTTGGAGAGGGAGTGCTCGAGGACCATAGTTAGGGTTTTGGCTTGCTGTGGTAGTGGTGAGTTTGAAGATGATGGAGAGTTTGATTGTTGTGAGAGGAGGGAGAGAGGGATTCAGTGGTGTGAGAGGCTGAGGAGTGCGTTTTCGCCAAGTGGATTCAGCGATGATGTGGTGGATGATGTGAAAGCATTGCTCAAGAGGTACCAACCAGGGTGGTCACTTGTGGTGTCTCAAGGAGATGAACATCTCTCAGGGATTTACTTGACATGGAAGGAGGAACCGGTGGTTTGGGCATCAGCATGGAAACCCTAG 1314 0.4893 MDISPYTTPKKLSPHSNNHNNIIADEAAALLDHNNMHRSNHSHTSTSRSSDSSEPSEDGKWAPKLLRECAKAISERDSSKTHHHLWMLNELASPYGDCDQKLASYFLQALFCRATESGERCYKTLSSVAEKNHSFDSAMRLILKFQEVSPWTTFGHVASNGAILEALEGEPKLHIIDLSNTLCTQWPTLLEALATRNDETPHLKLTVVAIAGSVMKEIGQRMEKFARLMGVPFEFNVISGLSQITKEGLGVQEDEAIAVNCVGTLRRVEIEERENLIRVFKSLGPKVVTVVEEEADFCSSRENFVKCFEECLKFYTLYFEMLEESFPPTSNERLMLERECSRTIVRVLACCGSGEFEDDGEFDCCERRERGIQWCERLRSAFSPSGFSDDVVDDVKALLKRYQPGWSLVVSQGDEHLSGIYLTWKEEPVVWASAWKP* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0253 437 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 37 436 IPR005202 -
Gso15g0253 437 MobiDBLite consensus disorder prediction 36 60 - -
Gso15g0253 437 Pfam GRAS domain family 64 436 IPR005202 -
Gso15g0253 437 ProSiteProfiles GRAS family profile. 53 436 IPR005202 -
Gso15g0253 437 PANTHER PROTEIN SHORT-ROOT-LIKE 37 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0253 Gso-Chr15 2296400 2298375 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0253 37 437 GRAS Transcription Factor Family AT4G37650 51.529 2.55e-142 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gso15g0253 GRAS 1.2e-93 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0253 - - gmx:100818806 759.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0253 15 2296400 2298375 Gso11g3551 11 51294657 51296551 GST
Gso7g0346 7 3248456 3250676 Gso15g0253 15 2296400 2298375 PCT
Gso16g0060 16 681975 684173 Gso15g0253 15 2296400 2298375 PCT