Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0247 ATGGAATACCCTTTTTCCCCAAAGGAGAGTGTAATTGGGGATTGGCAATCTTCTGGAGCTCAGTTGGAGGGATCAGCATCATTAGATGGCAGAATGAGCAATTCAATACCAGAGGATATGCCCAATAGCTTCTCTGAGCTCATGAACTTTGATACCTATGCTGGTTTGTGCAACAGCCCATCCATAACTGATCAGATTTTGGCTAATGACCTTCCATCATTTGCCTCATTATCATATCCGTTGCCCGATGGGTTCAATCTAGTCCAACAGTACAGTGGGCAATACTGTATGTCAGGAGTTGGCAGAAATAACAATGACATGGAAAGCTCCCCCATTTATGGGGAGAAAGTTGTGTGTCAGCAAATGGACACCCTACTTGGTTGCTTAAATGATACAAATGAAGCAAATAACTTGAATTCTAAGCTAAAAATGAATAGCTCTTCTCAACATCTCAATAACTTTGATACAGGCAATTATATGATGTCTAGGTCACCTGGTTTGTCACTTGATGAGAGAATGCTGAGGGCTTTGTCCTTCTTTAAGGAATCAGCTGGTGGGGGAATATTGGCACAAGTTTGGGTACCCATAAAGCATGGTGATCAGTTCATCTTAAGCACGAGTGACCAACCTTATTTGCTAGATCAAATGCTCGCAGGGTATCGTGAAGTGTCCAGGACATTTACATTTTCTACAGAAGGAAAATCTGGTTGTTTCTTAGGACTTCCTGGTCGTGTGTTTACGTCCAAAGTTCCTGAGTGGACTTCAAATGTTGGTTATTACAGTATGAGTGAGTACTTAAGGTTTGAGCATGCAATTAATCACAAGGTTCGTGGATCAATTGCAATTCCCATATTTGATCTGCACTCTGAATTTCCATGCTGTGCTGTACTGGAACTTGTCACTACAAAGGAAAAGCCAGATTTTGACAGAGAATTGGAAATTGTTCGTCATGCACTCCAGCTTGTAAATTTAAGGACTGTCAAGACTCTCAGATGTCTTCCCCAGAGTCTTTCAAACAACAAAAAAGCTACTTTGACCGAGATAGTTGATGTGTTACGATCTGTCTGTCATGCACATAGATTACCACTGGCACTGACATGGATTCCCTGTGGTTACACTGAGTGCTCAAGAGGTGAAGCTTCAAGAATACGAATTAAAGGGGGTCATTCAACTTCTAGTGAAAAAAGCGTACTGTGTCTTGAAGAATCTGCTTGCTACATAACTGATAGAGCAATGGCAGGATTTATCCGTGCATGCATGGAACATCATCTTGAGGAAGGGAAAGGTATAGCTGGGAAAGCTCTTCAATCAAATCATCCTTTCTTCTATCCTGATGTGAAAACATATGATATTAGTGAATATCCACTTGTCCATCATGCACGCAAGTATAATTTGAATGCTGCAGTTGCAATTAGGCTAAGGAGTACTTATACTAATGATGATGATTACATATTGGAATTCTTTCTGCCTGTCAATATGAGAGGGAGTTCAGAGCAGCAACTTTTATTAGACAACCTCTCGGGTACGATGCAGAGAATTTGTAGTAGTTTGAGGACAGTTTCAGAAACCGAATTATCAGGAATAGAAAGCTCACCAGTGGGGCTTGGAAAGAAAAATGCCCCCAGTTTTTTTCCTTTGTCAAGTAGAAACTCTGACATACCATTAATAAATGGTGACTGTGATTCTGTCCAGAAGATGTCATTGAAGGCAACAACTAACCTAAAGGACAACGAAATTGAGCCTTCTCCTAACCAGGAAAGAAATGGATCAAAAAGACAGGTCCAGAAAAATAGAAGTACATCGGAGAAGAATGTTAGCTTGAGTGTTCTCCAACAATACTTTTCTGGTAGTCTGAAGGACGCTGCAAAAAAGATTGGTGTTTGCCCAACAACTCTGAAAAGGATATGCAGGCAACATGGAATTCCAAGGTGGCCATCCCGCAAGATTAATAAAGTCAATCGATCATTGAAGAAGATACAGACTGTGCTTGACTCTGTCCAGGGCATGGAAGGAGGGTTGAAGTTTGATCCTTCTATGGGGGCGTTTGTGGCAGGAGGGTCAATCATCCAGGAAATTGATGCACCTAAAAGTACTATAAAAGACCCCGTGCCTGTTACTCAAGATGCATTCTCAGTACCACCCGCACCTTGTAGTGAAGGTGAGAATTTTTCAATTAAGTTGGAGGGAAAATTGAAGAAAACCAATGTTTCTTCAGTTGATTACAGTGAAGATTCAAAATCTATGGCAATCAATGATGGGTCGTGCCAGATGGCAAGCCTTTGCACCAAGGTGCAGGATTGTCCTGAACAAGCTTGCTTGGGTTCTGTTCTTGCAAAAGAACATGATAAACGAATTCTGAACAAGGGTGGTTTGAGTGTAGAAAAATTTAAACACAATATTGTTGGCCAGAGTTCAAAATCTTTGATTGCTGATGAGATGGACATTGGTGTAGATGGGGATGATGGAGTTGTTGAACGTAACCACCCTACTTCCTCAAGCTTGACAGACTCATCTAATGGCTCTGGCTCAATGATGCATAGCAGTTCATCAGGCTCTCGGAGCTTTGAGAACCAGGATCAGTCCAAAGTCAAATCAACCATCATTGATTGTGGGTCGAAACTAATTGTCAAAGCTACCTATAGAGAAGACACCATTCGTTTCAAGTTTGATCCATCTGAAGGTTGTTTCAGACTATATGAAGAAGTTGCAGCAAGATTCAAACTACAAAATGGGTTATTTCAGCTCAAATATCTAGATGATGAAGAGGAATGGGTGATGTTGGTGAATGATGCTGATTTGCAAGAGTGTATAGAAATATTGGATGATATTGGCACACGTAGCGTCAGGTTTCTTGTTCGTGATATGCCTTCCGTTTTAAGCAGTTCTGGCAGTAGCAATAGCTACTTGGGAGGCAGCTCATAG 2922 0.412 MEYPFSPKESVIGDWQSSGAQLEGSASLDGRMSNSIPEDMPNSFSELMNFDTYAGLCNSPSITDQILANDLPSFASLSYPLPDGFNLVQQYSGQYCMSGVGRNNNDMESSPIYGEKVVCQQMDTLLGCLNDTNEANNLNSKLKMNSSSQHLNNFDTGNYMMSRSPGLSLDERMLRALSFFKESAGGGILAQVWVPIKHGDQFILSTSDQPYLLDQMLAGYREVSRTFTFSTEGKSGCFLGLPGRVFTSKVPEWTSNVGYYSMSEYLRFEHAINHKVRGSIAIPIFDLHSEFPCCAVLELVTTKEKPDFDRELEIVRHALQLVNLRTVKTLRCLPQSLSNNKKATLTEIVDVLRSVCHAHRLPLALTWIPCGYTECSRGEASRIRIKGGHSTSSEKSVLCLEESACYITDRAMAGFIRACMEHHLEEGKGIAGKALQSNHPFFYPDVKTYDISEYPLVHHARKYNLNAAVAIRLRSTYTNDDDYILEFFLPVNMRGSSEQQLLLDNLSGTMQRICSSLRTVSETELSGIESSPVGLGKKNAPSFFPLSSRNSDIPLINGDCDSVQKMSLKATTNLKDNEIEPSPNQERNGSKRQVQKNRSTSEKNVSLSVLQQYFSGSLKDAAKKIGVCPTTLKRICRQHGIPRWPSRKINKVNRSLKKIQTVLDSVQGMEGGLKFDPSMGAFVAGGSIIQEIDAPKSTIKDPVPVTQDAFSVPPAPCSEGENFSIKLEGKLKKTNVSSVDYSEDSKSMAINDGSCQMASLCTKVQDCPEQACLGSVLAKEHDKRILNKGGLSVEKFKHNIVGQSSKSLIADEMDIGVDGDDGVVERNHPTSSSLTDSSNGSGSMMHSSSSGSRSFENQDQSKVKSTIIDCGSKLIVKATYREDTIRFKFDPSEGCFRLYEEVAARFKLQNGLFQLKYLDDEEEWVMLVNDADLQECIEILDDIGTRSVRFLVRDMPSVLSSSGSSNSYLGGSS* 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0247 973 Pfam PB1 domain 876 954 IPR000270 GO:0005515
Gso15g0247 973 CDD PB1_NLP 874 954 IPR034891 -
Gso15g0247 973 PANTHER PROTEIN NLP8 728 969 IPR045012 GO:0003700
Gso15g0247 973 PANTHER PROTEIN NLP8 7 728 IPR045012 GO:0003700
Gso15g0247 973 Pfam RWP-RK domain 604 652 IPR003035 -
Gso15g0247 973 Gene3D - 870 952 - -
Gso15g0247 973 SMART PB1_new 873 955 IPR000270 GO:0005515
Gso15g0247 973 MobiDBLite consensus disorder prediction 572 603 - -
Gso15g0247 973 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 728 969 - -
Gso15g0247 973 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 7 728 - -
Gso15g0247 973 MobiDBLite consensus disorder prediction 1 33 - -
Gso15g0247 973 MobiDBLite consensus disorder prediction 819 857 - -
Gso15g0247 973 ProSiteProfiles RWP-RK domain profile. 586 672 IPR003035 -
Gso15g0247 973 MobiDBLite consensus disorder prediction 572 590 - -
Gso15g0247 973 ProSiteProfiles PB1 domain profile. 873 955 IPR000270 GO:0005515
Gso15g0247 973 MobiDBLite consensus disorder prediction 826 857 - -
Gso15g0247 973 SUPERFAMILY CAD & PB1 domains 870 958 - -
Gso15g0247 973 MobiDBLite consensus disorder prediction 11 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0247 Gso-Chr15 2236895 2245159 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0247 1 970 NLP Transcription Factor Family AT2G43500 49.592 0.0 811
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gso15g0247 PB1 1.6e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0247 - - gmx:100804426 1875.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0247 15 2236895 2245159 Gso11g3557 11 51345905 51353230 GST
Gso15g0247 15 2236895 2245159 Gso12g0416 12 3630531 3636777 PCT
Gso15g0247 15 2236895 2245159 Gso11g1070 11 9548784 9554732 PCT
Gso12g0416 12 3630531 3636777 Gso15g0247 15 2236895 2245159 PCT
Gso11g1070 11 9548784 9554732 Gso15g0247 15 2236895 2245159 PCT