Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0243 ATGAATTGCTTATGTGAGAAAGACTCTGGTCTATTTTCTTCTCATTCAACAGCTCCCTATGTTCTTGGATGCCCATCATGGGCGACTTCTGAATTTGAAGTCCAACGATCATCTATGTCCAGAAGTTTGAGCTCAAAAGTGGATGTTCTTCCACAACAATGCCACAATAGCAAGACATTTAATTTTCAATTCCAAGAACAGGATGCATCTTCAACCAAATCCACTGATCAATCTTATCCAGAAGTTGGTCAAATTTCTGTCCAGCATAGTTCTACTGATTCAACACTTATCAGAAATGAGGGGAAGAGTATGGGATGTGTCATCAGGTCATTTATGGGGAGTCAGGATTTCCCTTTCCCTCCTCCACTACTGGATCACAGACCAATACTTGCGCATATTGCATGTCACTATGCTGATCCATGCTATAGTGGTCTAGTGGCTGCTGCATATAGTCCACAGTCTAAGCCAGTGGAAACTGCTCCTGTTCGAATTCCTCTTCAATTGGATTTTGCAGAAGAACCTATATACGTGAATTCAAAGCAGTACCATGCTATTCTGAGGCGAAGACAGTATCGAGCAAAACTCGAAGCGCTTAACAAACCCATCAAGGATCGGAAACCGTATCTTCACGAGTCTCGCCATCAACATGCACTGAAGAGAGCTAGAGGCGCTGGTGGACGCTTTCTCAATACAAAAAAACAATTACAATCAAATCATACACCTGGGAATATTGCAGAATCAAAAATGCATCACATTGAAAACTATAGAGATGGTGCTGATGTCTCATATGCATTTAACAGTGATGCAAGAAACATGCAGAATGATGCAGCTGATAAGGGTGGTGGCACCACTCAGCACCCTCTATTTGTCTACATGTGA 879 0.4209 MNCLCEKDSGLFSSHSTAPYVLGCPSWATSEFEVQRSSMSRSLSSKVDVLPQQCHNSKTFNFQFQEQDASSTKSTDQSYPEVGQISVQHSSTDSTLIRNEGKSMGCVIRSFMGSQDFPFPPPLLDHRPILAHIACHYADPCYSGLVAAAYSPQSKPVETAPVRIPLQLDFAEEPIYVNSKQYHAILRRRQYRAKLEALNKPIKDRKPYLHESRHQHALKRARGAGGRFLNTKKQLQSNHTPGNIAESKMHHIENYRDGADVSYAFNSDARNMQNDAADKGGGTTQHPLFVYM* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0243 292 PRINTS CCAAT-binding transcription factor subunit B signature 174 196 IPR001289 GO:0003700|GO:0006355
Gso15g0243 292 PRINTS CCAAT-binding transcription factor subunit B signature 205 228 IPR001289 GO:0003700|GO:0006355
Gso15g0243 292 SMART cbf3 170 231 IPR001289 GO:0003700|GO:0006355
Gso15g0243 292 ProSitePatterns NF-YA/HAP2 subunit signature. 176 196 IPR018362 GO:0003677|GO:0016602
Gso15g0243 292 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 173 228 IPR001289 GO:0003700|GO:0006355
Gso15g0243 292 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 20 257 IPR001289 GO:0003700|GO:0006355
Gso15g0243 292 Gene3D - 171 232 - -
Gso15g0243 292 ProSiteProfiles NF-YA/HAP2 family profile. 171 231 IPR001289 GO:0003700|GO:0006355
Gso15g0243 292 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 20 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0243 Gso-Chr15 2205028 2208483 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0243 14 268 CCAAT-HAP2 Transcription Factor Family AT1G17590 41.219 2.91e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gso15g0243 CBFB_NFYA 1.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0243 K08064 - gmx:100803893 590.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0243 15 2205028 2208483 Gso7g0316 7 2945027 2949664 PCT
Gso15g0243 15 2205028 2208483 Gso16g0037 16 392739 396490 PCT
Gso7g0316 7 2945027 2949664 Gso15g0243 15 2205028 2208483 PCT
Gso16g0037 16 392739 396490 Gso15g0243 15 2205028 2208483 PCT
Gso12g0374 12 3284272 3287022 Gso15g0243 15 2205028 2208483 PCT