Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0242 ATGGAGGCACTAAGTCGCTCCGTGGAAGAAATATTCGAGGATTTCCAGGGCCGAAGAGCCGGCATCATCAAAGCCCTTACCACCGATGTTGAAGATTTCTACAGCCAATGTGATCCTGAGAAGGAGAATTTGTGCTTATATGGATTTCCTAATGAGCAATGGGAGGTAAATTTACCCGTTGAAGAAGTTCCTCCAGAGCTTCCTGAGCCTGTCCTAGGCATTAACTTTGCTAGGGATGGCATGCTGGAAAAAGACTGGTTATCATTAGTTGCTGTTCATAGTGATACATGGTTACTTGCCCTTGCCTTTTATTTTGGAGCCAGATTTGGATTTGATAAAACTGACAGGAAACGACTATTCGGTATGATCAATGAACTACCAACAATATTTGAAGTTGTTACTGGTGAAGCAAAGAAACAAGTTAAAGAGAAGTCTTCGGTTTCAAACAACAGTGGCAGCAAATCTAAGTCTAACTCTAAAGCGGCTTCCGAAACCCAGGGCAGACAGTCAAAGGCATTACAAACAAAAGATGAGGATGAAGAACTAGAAGAGCAAGATAACGATGAACATGGAGATACCTTGTGTGGGGCATGTGGTGAGAATTATGGTACTGATGAATTCTGGATTTGCTGTGACATCTGTGAGAAGTGGTTCCATGGCAAATGTGTGAAGATCACCCCTGCTAGAGCAGAGCTTATCAAGCAATACAAGTGCCCATCATGCAGTAACAAGAGAGCTCGCTAA 744 0.4301 MEALSRSVEEIFEDFQGRRAGIIKALTTDVEDFYSQCDPEKENLCLYGFPNEQWEVNLPVEEVPPELPEPVLGINFARDGMLEKDWLSLVAVHSDTWLLALAFYFGARFGFDKTDRKRLFGMINELPTIFEVVTGEAKKQVKEKSSVSNNSGSKSKSNSKAASETQGRQSKALQTKDEDEELEEQDNDEHGDTLCGACGENYGTDEFWICCDICEKWFHGKCVKITPARAELIKQYKCPSCSNKRAR* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0242 247 SMART PHD_3 194 242 IPR001965 -
Gso15g0242 247 SUPERFAMILY FYVE/PHD zinc finger 184 245 IPR011011 -
Gso15g0242 247 CDD PHD_AL_plant 194 244 IPR044104 -
Gso15g0242 247 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 1 247 - -
Gso15g0242 247 ProSiteProfiles Zinc finger PHD-type profile. 192 244 IPR019787 -
Gso15g0242 247 ProSitePatterns Zinc finger PHD-type signature. 195 241 IPR019786 -
Gso15g0242 247 MobiDBLite consensus disorder prediction 144 170 - -
Gso15g0242 247 Pfam PHD-finger 195 244 IPR019787 -
Gso15g0242 247 Pfam Alfin 7 135 IPR021998 GO:0006355|GO:0042393
Gso15g0242 247 PANTHER CPG BINDING PROTEIN 1 247 IPR045104 GO:0006355|GO:0042393
Gso15g0242 247 MobiDBLite consensus disorder prediction 141 189 - -
Gso15g0242 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 243 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0242 Gso-Chr15 2199107 2204116 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0242 6 247 Alfin-like Transcription Factor Family AT3G42790 73.554 2.76e-119 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gso15g0242 Alfin 1.3e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0242 - - gmx:100777146 446.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0242 15 2199107 2204116 Gso11g3567 11 51402655 51406270 GST
Gso15g0242 15 2199107 2204116 Gso7g0315 7 2938424 2942273 PCT
Gso15g0242 15 2199107 2204116 Gso16g0036 16 385195 389237 PCT
Gso7g0315 7 2938424 2942273 Gso15g0242 15 2199107 2204116 PCT
Gso16g0036 16 385195 389237 Gso15g0242 15 2199107 2204116 PCT