Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0230 ATGGAACCTCGGGTTGCCAACAAGTTCCGTCTTGGCCGCAAGATTGGTAGCGGATCCTTCGGCGAGATCTATCTCGGTACGAATACCCAGACAAATGAAGAGGTTGCAATTAAGCTCGAAAATGTCAAAACCAAGCATCCTCAATTGTTGTACGAATCAAAGTTGTATAAAATACTGCAAGGAGGAACTGGGATCCCAAATGTGAGATGGTTTGGCATTGAAGGAGATTACAATGTCCTTGTGATGGATTTACTGGGACCTAGTCTTGAGGATTTATTCAATTTCTGTACCCGGAAATTGTCTCTCAAAACTGTTCTCATGCTTGCTGATCAGATGATAAATCGAGTTGAGTTTATTCATTCCAAATCATTTTTACATAGGGACATCAAGCCAGACAACTTCCTAATGGGTTTGGGGAGGCGTGCAAATCAAGTTTATGCCATTGACTTTGGTCTTGCTAAGAAGTACAGAGACACCTCTACCCATCAACATATTCCTTACAGAGAGAATAAGAATTTGACTGGAACTGCTAGATATGCTAGTATGAATACTCATCTTGGAATTGAGCAAAGCCGTAGGGACGACTTAGAATCACTTGGATTTGTTCTTATGTATTTTTTGAGAGGAAGTCTCCCGTGGCAGGGATTGAAAGCAGGTACTAAGAAGCAGAAGTATGAGAAAATCAGTGAGAAGAAAGTTTCTACTTCTATCGAGTCTCTGTGCCGTGGCTACCCCTCAGAGTTCGCTTCATACTTCCATTACTGTCGGTCACTGCGATTTGATGATAAACCAGATTATGCTTATCTGAAAAGGCTTTTCCGTGACCTTTTCATTCGTGAAGGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAATCTCAAATTGCCACACCTGTTCGTGTTATTGTTCCTGCTGCTGGACAAAGTTCTGGGCTGCCACCAGCTGTTGTAAATGCTGATAGACAGACAGGTGGGGTGAACAGTAGGCATACTGGTTGGTCTTCATCTGATCCTGCTCGAAGAAGAAACTCTGGACCTATTGCAAATGATGGAATGTCGTCAAGACAAAAAGCCCCAGTTCCAAGTGATTCAACTGGATCTAAAGATGTTATGTTGTCTAGTTCTAATTTCCGGTCAAGTGGATCCACAAGGCGAGGTGCTGTATCGAGCAGTCGTGATGCAGCTGTTGGCAATGAGACTGAGCCCTCTCATCCTCTCACCATGGATGCTAGTCCAGGAGCACTCCGTAAAATCTCCAATGCTCAAAGAAGTTCACCTATCATGTCATTTGAGCACAACAGAACATCCTCTGGAAGAAACACATCAAACATGAAGAATTACGAGTCAACTCTCCGGGGTATTGAGACCCTAAATTTCAATGACGAGAGGTTACAGTATTAG 1416 0.4273 MEPRVANKFRLGRKIGSGSFGEIYLGTNTQTNEEVAIKLENVKTKHPQLLYESKLYKILQGGTGIPNVRWFGIEGDYNVLVMDLLGPSLEDLFNFCTRKLSLKTVLMLADQMINRVEFIHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGFVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQIATPVRVIVPAAGQSSGLPPAVVNADRQTGGVNSRHTGWSSSDPARRRNSGPIANDGMSSRQKAPVPSDSTGSKDVMLSSSNFRSSGSTRRGAVSSSRDAAVGNETEPSHPLTMDASPGALRKISNAQRSSPIMSFEHNRTSSGRNTSNMKNYESTLRGIETLNFNDERLQY* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0230 471 MobiDBLite consensus disorder prediction 316 416 - -
Gso15g0230 471 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Gso15g0230 471 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g0230 471 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g0230 471 SUPERFAMILY Protein kinase-like (PK-like) 6 290 IPR011009 -
Gso15g0230 471 Gene3D Transferase(Phosphotransferase) domain 1 1 307 - -
Gso15g0230 471 PANTHER CASEIN KINASE-RELATED 1 456 - -
Gso15g0230 471 PANTHER CASEIN KINASE 1-LIKE PROTEIN 2 1 456 IPR030509 GO:0004672|GO:0005524
Gso15g0230 471 MobiDBLite consensus disorder prediction 326 402 - -
Gso15g0230 471 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g0230 471 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Gso15g0230 471 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0230 Gso-Chr15 2109299 2114586 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0230 7 223 EF-hand Containing Proteins AT2G17890 27.111 3.03e-14 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Gso15g0230 Pkinase 9.4e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0230 K02218 - gmx:100795570 930.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0230 15 2109299 2114586 Gso11g3577 11 51487222 51492436 GST
Gso15g0230 15 2109299 2114586 Gso7g0062 7 559584 563721 PCT
Gso15g0230 15 2109299 2114586 Gso8g1577 8 15378477 15382679 PCT