Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0221 ATGGAAACTTCTTCTAGTTCCCAAGATCCTCGAATCAAATATGATGTCTTCATCAGCTTTAGAGGCACAGACGTACGGTGTGGTTTTCTTAGCCATTTGAAGAAGGAACTGCGCCAGAAGCAAGTTGATGCCTTTGTTGATGACAGGCTTGAAGGAGGGGATGAGATATCACACTCACTTGACAAAGCCATTGAAGGATCACTTATTTCTTTGGTCATATTCTCCAAAGACTATGCTTCTTCAAAGTGGTGCTTGGAAGAGGTTGTGAAAATAATTGAGTGCATGCACAGTAATAAACAGATTGTGATTCCTGTTTTCTACAACGTAGATCCATCAGACGTACGGCACCAAAAAGGGACTTATGGAGATGCATTTGCTAAGCACGAAAAAAATAAAAGAAACCTTGCAAAGGTGCCAAATTGGAGATGTGCTCTAAATATAGCTGCCAATCTTTCTGGATTTCATTCATCAAAATTTGTGGATGAAGTTGAGCTTATAGAAGAAATTGCCAAATGTTTGTCATCCAAGTTGAATCTTATGTACCAAAGTGAGTTAACAGAGCTTGTTGGAATTGAAGAACGGATTGCAGATTTGGAGTCACTATTGTGCCTAGGATCGACAATAGTAGGTGTTCGTGTCATTGGGATTTGGGGCATGGGTGGTATTGGAAAGACAACTATTGCAGCTGCAGTATATAACCGCCTTTATTTTGAATATGAAGGGTGTTGCTTTATGGCAAACATAACAGAAGAATCAGAGAAGCATGGAATGATTTATGTGAAGAACAAAATTATCTCTATACTACTAAAGGAAAATGATCTACAGATTGGCACACCTAATGGAGTTCCCCCATATGTTAAGAGAAGGTTGATTCGTAAAAAGGTTCTCGTTGTTCTTGATGATATCAATGATTCAGAACAACTAGAAAATTTAGTTGGAGCACTTGATTGGTTTGGATCTGGTAGTAGAATCATTGTAACAACTAGAGATAAGGGTGTGCTTGGGAAAAAGGCTGATATTGTATATGAGGCTAAGGCATTAAACTCTGATGAAGCTATTAAACTTTTCATGTTGAATGCCTTCAAACAAAGTTGTCTTGAGATGGAGTGGATTGAGCTTTCGAGAAGGGTGATTCAGTATGCTAATGGAAACCCATTGGCCTTAAAAGTGTTGGGTTCTTTTCTTTATGGCAAGAGCCAAATAGAATGGGAAAGCCAATTACAGAAACTTAAGAAAATGCCTCATGTAAAAATTCAGAATGTATTGAGATTGACTTATGATAGACTTGATCGAGAAGAGAAGAACATATTTCTATATATTGCATGTTTTTTTAAAGGATATGAAGTACGCCGAATAATATATCTGCTTGATGCTTGTGGTTTCTCTACAATTATTGGGTTAAGAGTCCTTAAAGACAAGGCCCTCATAATTGAAGCCAAGGGCTCTGGAATCTCAATTGTATCAATGCATGACTTGATACAAGAAATGGGCTGGGAGATTGTTCGAGAAGAATGCATCGAAGACCCTGGAAAACGAACTAGGTTATGGGATCCTAATGACATTCATCTAGTGTTGAAAAATAACACGGGAACTAAAGCCATCAAAAGCATAACTTTTAACGTCTCAAAATTTGATGAGGTGTGCTTAAGTCCTCAAATCTTTGAAAGGATGCAACAGTTAAAATTTCTTAATTTTACCCAACATTATGGCGATGAGCAAATCCTGTATCTTCCCAAAGGCCTTGAATCTTTGCCTAATGACCTAAGACTTTTTCATTGGGTTAGTTATCCTTTGAAATCCTTGCCTCTATCATTTTGTGCTGAAAATCTCGTTGAGCTCAAATTGCCTTGGAGCCGAGTGGAAAAACTTTGGGATGGAATCCAGAATCTTGAACATTTAAAGAAAATTGACCTGAGTTATTCCAAAAATCTGCTAGAGCTCCCAGATTTTTCAAAGGCCTCAAATCTTGAAGAGGTGGAACTCTATAGTTGCAAAAACTTGCGTAATGTTCATCCATCTATTTTATCTCTCAAAAAGCTTGTACGGTTGAATCTCTTCTACTGCAAAGCGCTTACCAGTCTTAGAAGTGATTCCCATTTAAGATCTCTACGTGACCTCTTCCTGGGTGGTTGCTCAAGACTCAAGGAGTTTTCAGTGACTTCAGAGAATATGAAAGACTTAATTTTAACTTCAACTGCTATCAACGAGTTGCCCTCATCGATTGGGAGTCTAAGAAAACTAGAAACACTGACCCTTGATCACTGCAAAAGCCTAAGCAATCTTCCAAACAAGGTTGCCAACCTAAGATCACTTCGACGTCTTCATATTTATGGCTGCACACAACTTGATGCATCAAATCTTCATATCCTAGTTAATGGTTTAAAGTCTTTGGAAACATTGAAGTTGGAAGAATGCCGTAACTTGTTTGAAATTCCAGACAACATCAACCTCCTATCATCATTGCGTGAGTTGTTACTAAAAGGAACAGATATTGAGAGTGTTTCTGCAAGCATCAAGCATCTTTCAAAGCTGGAAAAGCTTGACTTGAGTGATTGCAGAAGGCTTTATTCTCTGCCAGAGCTTCCACAGTCCATAAAAGAGCTATATGCCATTAACTGTTCATCCTTGGAGACTGTAATGTTCACTTTGAGTGCTGTTGAAATGCTACATGCATACAAGTTACACACGACATTCCAAAATTGTGTAAAATTGGATCAACATTCACTCAGTGCTATTGGAGTAAATGCTTATGTGAACATAAAGAAAGTGGCATATGATCAATTTTCAACAATTGGAACCAACTCAATCAAGTTTCTTGGTGGTCCAGTTGATTTTATCTACCCTGGAAGTGAGGTTCCAGAGTGGTTCGTGTATAGGACTACACAGGCTTCAGTAACTGTTGATCTCTCTTCTTCTGTTCCATGTTCCAAGATCATGGGTTTCATCTTTTGTGTTATTGTTGATCAGTTCACTTCAAACGACAAGAACTATATTGGATGTGACTGTTACATGGAAACCGGTGTTGGTGAAAGGGTCACACGTGGGCACATGGATAATTGGTCTAGCATACATGCCTGTGAATTTTTCTCCGACCATGTGTGTCTGTGGTATGATGAAAAATGCTGTCTGAAAAACCAAGAATGTGAAAGTGAAAGCATGGAAGAACTTATGGCAAGTTATAATCCAAAGATTTCATTTGAATTCTTTGCTAAAACTGGAAGTATTTGGGAAAAGCGGAGCGATATTATAATTAAAGGGTGCGGAGTGTGTCCAATATATGACACAGAATGTGACAATTTCTTTAAACAGATGGAATTGGAGTTGGAAATCACATTGCAATCCATGGCAACTAAAATGTCAAGTAAGGAAGCAACACTATCTCCAAAACAGGAATCTAAGAAACTGATCTTTCCACCCCATCAAATTGGAACTTGGAAGAATGCAACACAAGGGTTGAAAGATATACTGTTCCTGTGA 3477 0.3825 METSSSSQDPRIKYDVFISFRGTDVRCGFLSHLKKELRQKQVDAFVDDRLEGGDEISHSLDKAIEGSLISLVIFSKDYASSKWCLEEVVKIIECMHSNKQIVIPVFYNVDPSDVRHQKGTYGDAFAKHEKNKRNLAKVPNWRCALNIAANLSGFHSSKFVDEVELIEEIAKCLSSKLNLMYQSELTELVGIEERIADLESLLCLGSTIVGVRVIGIWGMGGIGKTTIAAAVYNRLYFEYEGCCFMANITEESEKHGMIYVKNKIISILLKENDLQIGTPNGVPPYVKRRLIRKKVLVVLDDINDSEQLENLVGALDWFGSGSRIIVTTRDKGVLGKKADIVYEAKALNSDEAIKLFMLNAFKQSCLEMEWIELSRRVIQYANGNPLALKVLGSFLYGKSQIEWESQLQKLKKMPHVKIQNVLRLTYDRLDREEKNIFLYIACFFKGYEVRRIIYLLDACGFSTIIGLRVLKDKALIIEAKGSGISIVSMHDLIQEMGWEIVREECIEDPGKRTRLWDPNDIHLVLKNNTGTKAIKSITFNVSKFDEVCLSPQIFERMQQLKFLNFTQHYGDEQILYLPKGLESLPNDLRLFHWVSYPLKSLPLSFCAENLVELKLPWSRVEKLWDGIQNLEHLKKIDLSYSKNLLELPDFSKASNLEEVELYSCKNLRNVHPSILSLKKLVRLNLFYCKALTSLRSDSHLRSLRDLFLGGCSRLKEFSVTSENMKDLILTSTAINELPSSIGSLRKLETLTLDHCKSLSNLPNKVANLRSLRRLHIYGCTQLDASNLHILVNGLKSLETLKLEECRNLFEIPDNINLLSSLRELLLKGTDIESVSASIKHLSKLEKLDLSDCRRLYSLPELPQSIKELYAINCSSLETVMFTLSAVEMLHAYKLHTTFQNCVKLDQHSLSAIGVNAYVNIKKVAYDQFSTIGTNSIKFLGGPVDFIYPGSEVPEWFVYRTTQASVTVDLSSSVPCSKIMGFIFCVIVDQFTSNDKNYIGCDCYMETGVGERVTRGHMDNWSSIHACEFFSDHVCLWYDEKCCLKNQECESESMEELMASYNPKISFEFFAKTGSIWEKRSDIIIKGCGVCPIYDTECDNFFKQMELELEITLQSMATKMSSKEATLSPKQESKKLIFPPHQIGTWKNATQGLKDILFL* 1159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0221 1158 Pfam C-JID domain 947 1096 IPR045344 -
Gso15g0221 1158 Pfam TIR domain 13 190 IPR000157 GO:0007165
Gso15g0221 1158 PRINTS Disease resistance protein signature 213 228 - -
Gso15g0221 1158 PRINTS Disease resistance protein signature 289 303 - -
Gso15g0221 1158 PRINTS Disease resistance protein signature 381 395 - -
Gso15g0221 1158 PRINTS Disease resistance protein signature 839 855 - -
Gso15g0221 1158 Pfam Leucine Rich Repeat 609 628 IPR011713 -
Gso15g0221 1158 SUPERFAMILY L domain-like 489 884 - -
Gso15g0221 1158 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 440 IPR027417 -
Gso15g0221 1158 ProSiteProfiles TIR domain profile. 12 177 IPR000157 GO:0007165
Gso15g0221 1158 Gene3D Ribonuclease Inhibitor 511 722 IPR032675 -
Gso15g0221 1158 Gene3D Ribonuclease Inhibitor 723 911 IPR032675 -
Gso15g0221 1158 Pfam NB-ARC domain 211 420 IPR002182 GO:0043531
Gso15g0221 1158 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 744 1115 IPR044974 GO:0006952
Gso15g0221 1158 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 10 778 IPR044974 GO:0006952
Gso15g0221 1158 Gene3D - 175 341 IPR027417 -
Gso15g0221 1158 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 154 IPR035897 -
Gso15g0221 1158 Gene3D - 11 174 IPR035897 -
Gso15g0221 1158 Gene3D - 346 430 IPR042197 -
Gso15g0221 1158 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 10 778 - -
Gso15g0221 1158 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 744 1115 - -
Gso15g0221 1158 SMART till_3 13 151 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0221 Gso-Chr15 2018689 2023625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0221 5 854 WRKY Transcription Factor Family AT4G12020 34.722 9.20e-126 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0221 - - gmx:100799103 2294.23