Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0218 ATGTCTAATTTGACTTCTGCATCCGGTGAAGCTAGTGCATCTTCAGGCAACAGAACCGAAATTGGCACTGATTACTCACAACAATACTTTGCTCCACCACTAAGTCAAGCACAGCCTCCTCCACTAAAGAAAAAGAGAAACCTTCCTGGCAACCCAGACCCGGAAGCTGAAGTTGTCGCCTTGTCTCCAAAGACTCTCTTGGCAACTAATAGGTTCATTTGTGAGATCTGCAACAAGGGATTTCAAAGAGACCAGAATCTCCAACTTCACAGAAGAGGGCACAATTTACCATGGAAGCTGAAGCAGAGATCAAGCAACGAGATTATAAGGAAGAAGGTGTATGTGTGCCCAGAAGCCAGTTGCGTGCACCACGACCCTTCAAGGGCTCTTGGGGACCTCACTGGCATCAAGAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGTGACAAATGCTCCAAGAAGTATGCTGTTCAATCAGATTGGAAAGCTCACTCCAAGACCTGTGGCACTAGAGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACACACAGAGCCTTCTGTGATGCATTAGCAGAGGAGAGTTCAAGATCAGTGACAGGCATAGGCATAGTAGCCAACTCAACTTCAACTCAACCAACTGCAGCAGCAGCCTCTCATCAACAAGACATCATCCATGGTAATAGTAACAATTTCTCATTGAAGAAAGAGCAACAAGCAGGTTTCAGACCACCTTGGATTGGACAACCATCACCCTCTTCTGCTTCATCATTCTTGGTCTCTCATCAAGAAAACCCTAACCCTAGAGGTGGTGGTCCTGGTCCCACTCTTCTTCCTCCTTACCAAACAGCTCCTCACATGTCAGCCACAGCGTTGCTGCAGAAAGCATCCCAAATGGGTGCGACGATGAGCAAAACCGGGTCCATGATTGGGACCCACCAACAACAGGCTCACGTGTCTGCCAATGCCGCTTTGAATTTGTCCTCACGTGACCACCAGATGACCCCCACTCTCCATGGCTTGGTACCTTTCGGGAATAAAGCTGTTCCTGCTGTTGGTAATGGTGTTTCTCCTTCACTCCTTCACCATATCATCGACTCTTTCTCTTCACCCTTTGAAGGGACTTCTTTTGAGGACACTTTTGGTGGTGCTGGTGGCGATGCCATGACGAAAACAACCACCGCCGATGACGGTGCCAGAGGAAACAATAATGAAGCCCTGACAAGAGATTTCTTGGGTCTTAGACCTCTCTCTCACACTGATATCCTCAACATTGCTGGTATGGGAAGTTGCATCAACTCCTCCCAACATAACCAAACCCCAAACCCTTGGCAAGGTTAG 1368 0.4795 MSNLTSASGEASASSGNRTEIGTDYSQQYFAPPLSQAQPPPLKKKRNLPGNPDPEAEVVALSPKTLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSSNEIIRKKVYVCPEASCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESSRSVTGIGIVANSTSTQPTAAAASHQQDIIHGNSNNFSLKKEQQAGFRPPWIGQPSPSSASSFLVSHQENPNPRGGGPGPTLLPPYQTAPHMSATALLQKASQMGATMSKTGSMIGTHQQQAHVSANAALNLSSRDHQMTPTLHGLVPFGNKAVPAVGNGVSPSLLHHIIDSFSSPFEGTSFEDTFGGAGGDAMTKTTTADDGARGNNNEALTRDFLGLRPLSHTDILNIAGMGSCINSSQHNQTPNPWQG* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0218 455 Pfam Zinc-finger double-stranded RNA-binding 72 94 IPR022755 -
Gso15g0218 455 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Gso15g0218 455 Gene3D Classic Zinc Finger 127 206 - -
Gso15g0218 455 MobiDBLite consensus disorder prediction 251 285 - -
Gso15g0218 455 SMART c2h2final6 114 144 IPR013087 -
Gso15g0218 455 SMART c2h2final6 72 94 IPR013087 -
Gso15g0218 455 SMART c2h2final6 149 169 IPR013087 -
Gso15g0218 455 MobiDBLite consensus disorder prediction 1 33 - -
Gso15g0218 455 MobiDBLite consensus disorder prediction 1 55 - -
Gso15g0218 455 SUPERFAMILY beta-beta-alpha zinc fingers 71 169 IPR036236 -
Gso15g0218 455 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 94 IPR013087 -
Gso15g0218 455 Gene3D Classic Zinc Finger 51 121 - -
Gso15g0218 455 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 439 - -
Gso15g0218 455 MobiDBLite consensus disorder prediction 258 273 - -
Gso15g0218 455 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 3 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0218 Gso-Chr15 1986255 1989332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0218 1 444 IDZ Gene Family AT1G55110 48.852 4.86e-132 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso15g0218 zf-C2H2_jaz 6.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0218 K25870 - gmx:100820609 892.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0218 15 1986255 1989332 Gso11g3590 11 51603759 51606694 GST
Gso15g0218 15 1986255 1989332 Gso7g0078 7 681893 685319 PCT
Gso15g0218 15 1986255 1989332 Gso8g1591 8 15561207 15564814 PCT
Gso7g0078 7 681893 685319 Gso15g0218 15 1986255 1989332 PCT
Gso8g1591 8 15561207 15564814 Gso15g0218 15 1986255 1989332 PCT