Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0209 ATGGAGGAAAAGCCTAAGCTCCTCATCCATGGAACAATTGAAGCTACCATCTTCAATGCCACACCTTACTCACCTTCGTTTCCCTTCAATTGTGTATGCACAAATGGAAAGCCTGCTTATGTGACCATCAACATAGACAACAATAGGGTGGCGAAAACGACCCAAGAACATGAACGTGTGTGGAACCAAACCTTTCAGATTCAGTGTGCTCATCCAGAAGACTCAACTACCACAATTACCCTGAAAACATCATGCTCCGTTTTGGGAAAATTCCACGTGCAGGCCAAGCGGTTGAAGGAAGAGAGTTTGATCAATGGTTTCTTCCCTCTCCTTATGGAAAATGGAAAACCAAATCCACAACTAAAATTAAGATTCATGTTATGGTTCAAGCCAGCAGATATGGAACCAAGTTGGACAAAGATACTAAGCAATGGGGAATTTCAAGGGCTGAGGGATGCTACATTCCCACAAAGGTCCAATTGCCAGGTTAAACTCTATCATGATGCTCACCATTCCTCTACTTTCCACCCTCCTTTTGATCTATGTGGAGCACCAAGAAAGCTGTGGGAAGATGTCTATAAAGCCATTGAGGGTGCAAACTATTTGATTTATATTGCAGGCTGGTCTTTCAATCCCAAGATGGTTCTGGTTAGAGATCCACAAACAGAAATCCCACATGCTAGGGAGATAAAGCTGGGTGAACTATTGAAGAAGAAGGCAGAGGAAGGAGTAGCTGTGAGGGTTATGATTTGGGATGATGAAACATCTTTGCCTTTTATTAAGAACAAAGGTGTGATGAAGACTCATGATGAGGACGCTTTTGCCTACTTCAAACACACAAAAGTAATATGCAGAAAGTGTCCCAGGTTACACCACGAGTTTCCCACACTCTTTGCTCACCATCAGAAGACCATAACTGTGGACACCAGAGCACCCAACTCTGTTCGTGCCAGAGAAATTATGAGCTTTTTGGGTGGTGTAGATTTGTGCGATGGCCGGTATGACACAGAGAAACACTCACTGTTTCAGACACTCACCGAGGAATCACATTACCATGACTTCTACCAGACAAACATAGCAGGAGCTAGCCTCAACAAAGGAGGGCCAAGAGAGCCTTGGCATGATGCTCATGCTAGTGTAACTGGTGATGCTGCTTGGGATGTGTTAACCAATTTTGAGCAAAGATGGACAAAGCAATGTGATGCTTCTCTTCTAGTCCCTGCCAACACTCTAGAAAATCTCATTCCCACATGCTCAAGCCCTCCCAAAGAGAGGAATTGGAAAGTTCAAGTATACAGGTCAATTGACCATGTGTCTGCTAGCCAGTTGTTTAGAAAGCTAACTGTGGAGAGAAGCATCCATGAAGCCTATGTTGAAGCAATTAGGCGTGCCGATAGGTTTGTGTACATCGAAAACCAATATTTTATTGGGGGGTGCCATTTGTGGCAGAAAGATAGGCATAGTGGATGCAGGAATCTGATTCCGGTCGAGATTGCACTCAAGGTGGTCAGTAAGATTAAAGCAAGAGAGAGGTTTGCAGTGTACATAGTCATCCCAATGTGGCCAGAAGGAGTGCCTGAAAGTGAACCAGTTCAAGATATACTGCACTGGACCAGAGAAACAATGATAATGATGTATAAGTTGATTGGAGAAGCAATAATAGAAAGTGGTGAGCCAGGACATCCAAGAGATTACTTGAATTTCTTCTGCCTTGCAAATAGGGAAAAGAAGGGAAAAGAGGAGTATCTTTCACCACATTCTCCCCATCCTGAAACACAATACTGGAATGCACAAAAAAATAGGAGGTTCCCGGTTTATGTTCACTCCAAGATCATGATAGTGGACGATATATACATATTAATAGGATCAGCCAATGTGAACCAAAGATCCATGGATGGGCAAAGGGACACTGAGATTGCCATTGGGGCCTACCAATCTCAAGATGGAGCTGATCACCACATTATAAGCCGTGGTGATATTCATGCATACAGAATGTCACTGTGGTATGAGCACACTGGAATCACTGAGGAATTGTTCTTAGAGCCAGAAAGTTTGTCATGTGTTAAGAGAATGCTGTCAATAGGGGATCACATGTGGGGAGTCTACAGTAGTGAAGAAACTGTGGACATGGAAGGTGTGCACCTTGTAAGTTACCCTGTGAAAGTAACACAAGAAGGGTCTGTGAAGGATACGGTTGATGGTGGAGATCATTTTCCTGACACAAAATCTCCAGTGAAGGGGAAAAGATCAAAATTCTTAGCCCCTATCTTTACTACTTAA 2280 0.4333 MEEKPKLLIHGTIEATIFNATPYSPSFPFNCVCTNGKPAYVTINIDNNRVAKTTQEHERVWNQTFQIQCAHPEDSTTTITLKTSCSVLGKFHVQAKRLKEESLINGFFPLLMENGKPNPQLKLRFMLWFKPADMEPSWTKILSNGEFQGLRDATFPQRSNCQVKLYHDAHHSSTFHPPFDLCGAPRKLWEDVYKAIEGANYLIYIAGWSFNPKMVLVRDPQTEIPHAREIKLGELLKKKAEEGVAVRVMIWDDETSLPFIKNKGVMKTHDEDAFAYFKHTKVICRKCPRLHHEFPTLFAHHQKTITVDTRAPNSVRAREIMSFLGGVDLCDGRYDTEKHSLFQTLTEESHYHDFYQTNIAGASLNKGGPREPWHDAHASVTGDAAWDVLTNFEQRWTKQCDASLLVPANTLENLIPTCSSPPKERNWKVQVYRSIDHVSASQLFRKLTVERSIHEAYVEAIRRADRFVYIENQYFIGGCHLWQKDRHSGCRNLIPVEIALKVVSKIKARERFAVYIVIPMWPEGVPESEPVQDILHWTRETMIMMYKLIGEAIIESGEPGHPRDYLNFFCLANREKKGKEEYLSPHSPHPETQYWNAQKNRRFPVYVHSKIMIVDDIYILIGSANVNQRSMDGQRDTEIAIGAYQSQDGADHHIISRGDIHAYRMSLWYEHTGITEELFLEPESLSCVKRMLSIGDHMWGVYSSEETVDMEGVHLVSYPVKVTQEGSVKDTVDGGDHFPDTKSPVKGKRSKFLAPIFTT* 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0209 759 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 296 333 IPR001736 GO:0003824
Gso15g0209 759 SMART pld_4 296 333 IPR001736 GO:0003824
Gso15g0209 759 SMART pld_4 603 630 IPR001736 GO:0003824
Gso15g0209 759 PANTHER PHOSPHOLIPASE D ALPHA 5 759 - -
Gso15g0209 759 Gene3D Endonuclease Chain A 172 419 - -
Gso15g0209 759 Pfam Phospholipase D Active site motif 607 630 IPR001736 GO:0003824
Gso15g0209 759 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 603 630 IPR001736 GO:0003824
Gso15g0209 759 SUPERFAMILY Phospholipase D/nuclease 146 407 - -
Gso15g0209 759 PANTHER PHOSPHOLIPASE D 5 759 IPR015679 -
Gso15g0209 759 Pfam Phospholipase D C terminal 676 748 IPR024632 -
Gso15g0209 759 Gene3D Endonuclease Chain A 420 652 - -
Gso15g0209 759 PIRSF PLD_plant 3 759 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Gso15g0209 759 Pfam C2 domain 39 110 IPR000008 -
Gso15g0209 759 SUPERFAMILY Phospholipase D/nuclease 422 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0209 Gso-Chr15 1871694 1875030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0209 31 759 Phospholipase D Gene Family (Wang group) AT1G55180 62.180 0.0 962
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0209 K01115 - gmx:100807431 1568.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0209 15 1871694 1875030 Gso7g0093 7 829768 833468 PCT
Gso15g0209 15 1871694 1875030 Gso8g1607 8 15722965 15726855 PCT
Gso7g0093 7 829768 833468 Gso15g0209 15 1871694 1875030 PCT
Gso8g1607 8 15722965 15726855 Gso15g0209 15 1871694 1875030 PCT