Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0206 ATGATGAGTCGAGAACAACAGAAGCGAGGGAAGCAAGAAAAAGGTTCTGATGGAGCTGAAAAGGTTATTGTTGCCGTTAAGGCATCAAAGGAAATTCCAAAGACTGCTCTTGTTTGGTCCCTAACTCATGTTGTGCAACCTGGTGATTGCATTACACTGCTAGTGGTTGTACCTTCACAAAGTACAGGTCGAAGATTATGGGGTTTTCCAAGGTTTGCTGGCGACTGTGCCAATGGTCAAAAGAAGTCTACTTCAGGATCATCAAGTTCAGAACATAAGAGTGATATCACTGATTCTTGCTCTCAAATGATCCTTCAGCTCCATGATGTCTATGATCCTAACAAGATAAATGTGAAGATTAAAATTGTTTCTGGATCACCCTGCGGAGCAGTGGCTGCGGAAGCCAAGAAATCCCAAGCCAATTGGGTCGTATTAGACAAACAGCTTAAACATGAGGAAAAACAATGCATGGAAGAGCTGCAGTGCAACATCGTGGTTATGAAGCATTCCCAACCCAAGGTTCTCCGCTTGAATTTGGTTGGAACACAAAAGAAGGATTTTGAAGAATTATGTCCGTTACCTTCTGAACAAATTGAGATGCCTGGAAAACAAACAAAGAAGAAGCATGATTCTTTAAATTCTATAAAAGGACCAGTTGTCACTCCAACTAGCAGCCCTGAGCTAGGGACACCATTTACTACAATTGAAGCTGGTACTTCTTCGGTTTCAAGCTCTGATCAAGGAACTTCACCATTCTTCATCTCTGAGATGAATGGTGGTGGTGAGTCAAAGAAAGAGGAAACTATCATAGAAAATCCTGAACTTGATGATTCTATATCAGACACAGATAGTGAAAATTTGTCCACATCTTCAGCAAGCTTGAGATTCCAGCCATGGATCACTGATTTACTTTTGCATCAACGATCATCTCAACCCAAGGAGGAAAGAACAGAGAGATCTTATAATAAGCTTCAATCATCTACCGCCAGAGCTTTGCTAGAAAAGTTCTCAAGACTTGATAGAGAAGCTGAAATTGAACTCTCAACCTATAAGACTGACTTCAATTTCAGTGGAAATGTAAGAGAAGCAGTGGCATTATCTAGAAATACCCCACCTGGTCCACCTCCCTTATGTTCAATCTGTCAACACAAAGCTCCTGTTTTTGGAAAACCTCCCAAATGGTTCAGCTATGCTGAATTGGAGCTTGCCACAGGTGGATTTTCAAAAGCCAATTTCTTGGCAGAAGGAGGATTTGGATCTGTTCACAGAGGGCTTCTTCCAGATGGACAAGTCATTGCTGTCAAGCAACATAAATTGGCTAGTTCTCAGGGTGATCTTGAATTCTGCTCGGAGGTAGAAGTCCTGAGCTGTGCTCAGCACCGAAATGTTGTTATGTTGATTGGGTTCTGTATAGAGGATAAAAGAAGGCTATTGGTTTACGAGTACATATGTAACAGGTCATTGGATTCTCATTTATATGGGAGACAGCGAGAACCATTAGAATGGACTGCCCGGCAAAAAATTGCTGTTGGAGCTGCTCGAGGGTTACGATATCTTCATGAAGAGTGCAGAGTGGGTTGCATTATCCATCGTGACATGCGGCCAAACAACATTCTTATCACTCATGATTTTGAACCACTGGTTGGTGATTTTGGACTGGCAAGGTGGCAGCCTGATGGTGACACAGGAGTGGAAACTAGAGTAATTGGAACGTTTGGGTACTTGGCTCCAGAATATGCTCAAAGCGGCCAAATAACTGAAAAGGCAGATGTTTATTCTTTCGGTGTGGTATTGGTGGAACTTGTTACAGGACGAAAGGCCGTGGATCTCAATCGACCGAAGGGACAACAGTGTCTTACTGAGTGGGCACGGCCACTCTTGGAAGAATATGCCATTGAGGAACTGATTGATCCAAGGTTGGGAAGTCACTATTCTGAACATGAGGTCTATTGCATGCTACATGCTGCCTCATTATGCATAAGGCGAGATCCTTATTCTAGACCACGCATGTCACAGGTTCTTCGAATACTGGAGGGTGACACGGTCATGGATCCGAATTACATTTCAACTCCCAGTTATGATGTGGGAAACCGGGGTGGTTGA 2103 0.4308 MMSREQQKRGKQEKGSDGAEKVIVAVKASKEIPKTALVWSLTHVVQPGDCITLLVVVPSQSTGRRLWGFPRFAGDCANGQKKSTSGSSSSEHKSDITDSCSQMILQLHDVYDPNKINVKIKIVSGSPCGAVAAEAKKSQANWVVLDKQLKHEEKQCMEELQCNIVVMKHSQPKVLRLNLVGTQKKDFEELCPLPSEQIEMPGKQTKKKHDSLNSIKGPVVTPTSSPELGTPFTTIEAGTSSVSSSDQGTSPFFISEMNGGGESKKEETIIENPELDDSISDTDSENLSTSSASLRFQPWITDLLLHQRSSQPKEERTERSYNKLQSSTARALLEKFSRLDREAEIELSTYKTDFNFSGNVREAVALSRNTPPGPPPLCSICQHKAPVFGKPPKWFSYAELELATGGFSKANFLAEGGFGSVHRGLLPDGQVIAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNRSLDSHLYGRQREPLEWTARQKIAVGAARGLRYLHEECRVGCIIHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEYAIEELIDPRLGSHYSEHEVYCMLHAASLCIRRDPYSRPRMSQVLRILEGDTVMDPNYISTPSYDVGNRGG* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0206 700 SUPERFAMILY Protein kinase-like (PK-like) 391 686 IPR011009 -
Gso15g0206 700 CDD STKc_IRAK 413 679 - -
Gso15g0206 700 PANTHER OS01G0253100 PROTEIN 17 698 IPR045271 GO:0004714|GO:0006468
Gso15g0206 700 Gene3D Transferase(Phosphotransferase) domain 1 483 687 - -
Gso15g0206 700 Pfam Protein kinase domain 411 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g0206 700 ProSiteProfiles Protein kinase domain profile. 407 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso15g0206 700 Gene3D HUPs 5 173 IPR014729 -
Gso15g0206 700 ProSitePatterns Tyrosine protein kinases specific active-site signature. 528 540 IPR008266 GO:0004672|GO:0006468
Gso15g0206 700 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 17 698 - -
Gso15g0206 700 MobiDBLite consensus disorder prediction 201 267 - -
Gso15g0206 700 CDD USP_Like 21 145 - -
Gso15g0206 700 MobiDBLite consensus disorder prediction 216 256 - -
Gso15g0206 700 Gene3D Phosphorylase Kinase; domain 1 379 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0206 Gso-Chr15 1848929 1854900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0206 387 696 Trihelix Transcription Factor Family AT1G70460 52.500 7.15e-103 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Gso15g0206 Pkinase 1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0206 - - gmx:100804766 1394.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0206 15 1848929 1854900 Gso11g3606 11 51745359 51751183 GST
Gso15g0206 15 1848929 1854900 Gso7g0097 7 854646 860562 PCT
Gso15g0206 15 1848929 1854900 Gso8g1611 8 15745057 15751060 PCT
Gso7g0097 7 854646 860562 Gso15g0206 15 1848929 1854900 PCT
Gso8g1611 8 15745057 15751060 Gso15g0206 15 1848929 1854900 PCT