Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0197 ATGGATGGTCTAAGTTGGGATGCCTCATCACAACTTGTTGCTAACACACCGGTCTTGTGGAGCACTCAGTCTCAAGACCTTGAAGGAGACTATCATCATTCCATGCCCCACCTAAGTTCAAGTGTTCTGAATAATCAAACAGGCTATGCATATCCCAGTTCTGAAAAGGCGAGGGGCATGGTTCAGTTATCCACTATGTCTGAGATAATGAGTATGATGCCAAACACAAATCTGCCACAAAGAATTACAGCAACCATGCCTGTGAAATCAGGAGCAGCTGGAGCCAGTTGGGAAGAGGCTTTAATATCCCAATCATGCCCATCCCTTTCGGTGAATTATGTAGCAGATCTCAACAAGGCCCACCAACAACAACAACAGCTTATCAATGGCACACAAAACGGCAAGGCTACTACCTGCTCTCTTGATCAGTCAATTGATTGCTTGCTTTCAGCTACTAATAATAGTAACACAGACGCGTCTGTCGAAGATGATGGGATTTCGATGATTCTCTCTGACTGCAGAAACCTATGGAGTAACTTCAGTTATGGCAGTGCAGCTTCCTCTGGTGAATCTGATAGCAATGCTTCCATTAATGCTAGAAACAGTGACATGCGGTATCCATCAGTCAGTGAGCTGGATGAATCAGTGTCTCAAAGTTTCTCTGATCAATATCTCAGTCAAGTAAGAGTCATAGATTCTGAAGTTATTTGCACAAAAAGGAGCAGTAGTTCATGCTTCAGCATTGCTCAGAATTCTTCTGCCACTGAAGGTGGTTTCAGGCTTATCTCAGAGACTTCACCAAAGTCCAAGAGACCCAGATGGATTCATAAGCATCCTGGTTCATCAAATATCAACTTCCAGCAGCCAAATTCATCTGTGACACCTTCCTTTGAAGAACCTGATCCTGAGGTCATAGCACAAATGAAGGAAATGATATATAGGGCTGCAGCTTTTAGGCCAGTGAACTTGGGCCTTGAAGCGGTGGAAAAGCCAAAAAGGAAGAATGTTAGGATATCAACTGATCCACAGACAGTGGCTGCCAGGCAAAGAAGGGAGAGAATAAGTGAGAGGATTAGGGTTTTGCAGAAGATTGTGCCTGGTGGAAGCAAGATGGACACTGCATCAATGCTTGATGAAGCAGCAAACTACCTCAAGTTTCTCAGATCACAAGTCAAAGCACTGGAAAATCTAGGCAATAAGCTTGACACAATGAATTGTCCTCCCACTAACATAGACTTCTCTTTCAACCCTTCTTTTCCCATACAAACACATTTCCCCATCCAAAACCCTAGCAGCCACATCCAATATTCCAAGGGTTGA 1320 0.4379 MDGLSWDASSQLVANTPVLWSTQSQDLEGDYHHSMPHLSSSVLNNQTGYAYPSSEKARGMVQLSTMSEIMSMMPNTNLPQRITATMPVKSGAAGASWEEALISQSCPSLSVNYVADLNKAHQQQQQLINGTQNGKATTCSLDQSIDCLLSATNNSNTDASVEDDGISMILSDCRNLWSNFSYGSAASSGESDSNASINARNSDMRYPSVSELDESVSQSFSDQYLSQVRVIDSEVICTKRSSSSCFSIAQNSSATEGGFRLISETSPKSKRPRWIHKHPGSSNINFQQPNSSVTPSFEEPDPEVIAQMKEMIYRAAAFRPVNLGLEAVEKPKRKNVRISTDPQTVAARQRRERISERIRVLQKIVPGGSKMDTASMLDEAANYLKFLRSQVKALENLGNKLDTMNCPPTNIDFSFNPSFPIQTHFPIQNPSSHIQYSKG* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0197 439 Pfam Helix-loop-helix DNA-binding domain 348 387 IPR011598 GO:0046983
Gso15g0197 439 Coils Coil 377 397 - -
Gso15g0197 439 MobiDBLite consensus disorder prediction 265 298 - -
Gso15g0197 439 Gene3D - 343 406 IPR036638 GO:0046983
Gso15g0197 439 PANTHER TRANSCRIPTION FACTOR BHLH87 1 436 - -
Gso15g0197 439 SMART finulus 344 393 IPR011598 GO:0046983
Gso15g0197 439 MobiDBLite consensus disorder prediction 280 297 - -
Gso15g0197 439 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 338 387 IPR011598 GO:0046983
Gso15g0197 439 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 436 IPR045843 GO:0003700|GO:0006355
Gso15g0197 439 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 343 403 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0197 Gso-Chr15 1744886 1747534 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0197 95 430 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 48.246 2.44e-84 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso15g0197 HLH 1.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0197 - - gmx:100793830 848.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0197 15 1744886 1747534 Gso11g3616 11 51840617 51843175 GST
Gso15g0197 15 1744886 1747534 Gso7g0117 7 1060549 1062438 PCT
Gso15g0197 15 1744886 1747534 Gso8g1641 8 16040751 16042934 PCT
Gso7g0117 7 1060549 1062438 Gso15g0197 15 1744886 1747534 PCT
Gso8g1641 8 16040751 16042934 Gso15g0197 15 1744886 1747534 PCT