Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0184 ATGCCTTCATCTGTCGAAATACGTTCAATATGCCATTCAAACAGTGGTGGGTGCTTTCTTAAACTGGGAAAATATGATAACACAATTAAAGAATGCACAGAAGCATTAGAACTGAATCCTGTTTGCGTTAAAGCTTTGGTAAGAAGAGGAGAAGCTCATGAAAAGCTTGAGCATTTTGAAGAGGCCATTGCTGACTTCCATCTTCATTCATTCGTAAGCCATTCAGCGACTAGAGCCCCTTGCTGCAGAAAAACGAGAAAAGATGAAGGAGGAAATGATTGCAAAACTGAAAGAAATGGGCAATTCTGTCCTGGGCCGCTTTGGGATGAGTGTAGACAACTTTAA 345 0.4087 MPSSVEIRSICHSNSGGCFLKLGKYDNTIKECTEALELNPVCVKALVRRGEAHEKLEHFEEAIADFHLHSFVSHSATRAPCCRKTRKDEGGNDCKTERNGQFCPGPLWDECRQL* 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0184 114 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 2 67 - -
Gso15g0184 114 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 2 67 - -
Gso15g0184 114 Gene3D Tetratricopeptide repeat domain 5 90 IPR011990 GO:0005515
Gso15g0184 114 SMART tpr_5 9 42 IPR019734 GO:0005515
Gso15g0184 114 SMART tpr_5 43 76 IPR019734 GO:0005515
Gso15g0184 114 Pfam Tetratricopeptide repeat 16 41 IPR019734 GO:0005515
Gso15g0184 114 Pfam Tetratricopeptide repeat 44 66 IPR019734 GO:0005515
Gso15g0184 114 SUPERFAMILY TPR-like 8 67 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0184 Gso-Chr15 1569633 1572967 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0184 7 65 Calmodulin-binding Proteins AT3G25230 38.983 2.21e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0184 K24926 - gsj:114387537 248.054