Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0178 ATGACTCGGCGCTGCTCCCACTGCACCAACAACGGCCACAACTCCCGGACATGCCCGTCGCGGGGAGGGGGCGGCGTCAAGCTGTTCGGGGTGAGGCTGACGGATGGATCAATCATAAAGAAGAGCGCTAGCATGGGGAACCTTAACCTCTCCTCCTCCTCCTCCGCCGCCGCCGCACATCTGCAATTCCGTTCATCTCCTTCTTCTTCCAACCTCCCCGCGGCCTCATCGCCCAATCCAAGCTCCCCGTGCTCCGACCCGCCCCAAGGCTACTTGTCCGATGACCCCGCCCACGTCTCCACCTTCGCTAACCGCCGCGGTGATAGAAAAAAAGGTGTGCCATGGACTGAAGAAGAACATCGGCTGTTCTTAATTGGTCTCCAGAAGCTGGGCAAAGGAGACTGGCGTGGGATAGCACGTAATTTTGTTGTATCAAGAACCCCTACTCAAGTAGCAAGTCATGCCCAAAAGTATTTTATCCGGCAGAGTCATGCTACCAGGAGAAAGAGACGTTCCAGCCTTTTTGACATGGTTCCAGATATGTCTTCAGATCAACCTTCTGTGCCAGAAGAACAAGTGCTGCTTCCACCTCCCGAGAACTCACAACCTTGCAATGAAAAATCACAGCCCTCATTAAATCTCTCCCTCAAATCAGAATTTGAACCTATGGAGACTACTTCTCAAGAAAATGTGCAACAGACCAATGAACCTATGATGGGATCAAACAGATTGACACCAATGGCTCCTCATGGATGCTTTCCCGCATATTTACCTGTTCCTTTTCCCATGTGGCCATCAACTTGGGTTCACCCCTTTGAAGAAGTTAAGGGAGGAGAGACATGCCACCATCAGATCCACAAGCCAATCCCAGTCATTCCAAAGGAACCTGTTAATGTTGACGAACTTGTGGGAATGTCTCATCTAAGCATTGGGGAAGCACAGGTACGTGATAGAGAGCCTTCCCCTCTTTCCATAAAGTTGTTAGGAGAGCCCTCAAGGCAGTCAGCATTCCATGCAAATGTCCCGGTTGGTAGTTCGGATTTAAACAATGGCAAGGACAACGCAATTCAAGCTGTCTGA 1080 0.5083 MTRRCSHCTNNGHNSRTCPSRGGGGVKLFGVRLTDGSIIKKSASMGNLNLSSSSSAAAAHLQFRSSPSSSNLPAASSPNPSSPCSDPPQGYLSDDPAHVSTFANRRGDRKKGVPWTEEEHRLFLIGLQKLGKGDWRGIARNFVVSRTPTQVASHAQKYFIRQSHATRRKRRSSLFDMVPDMSSDQPSVPEEQVLLPPPENSQPCNEKSQPSLNLSLKSEFEPMETTSQENVQQTNEPMMGSNRLTPMAPHGCFPAYLPVPFPMWPSTWVHPFEEVKGGETCHHQIHKPIPVIPKEPVNVDELVGMSHLSIGEAQVRDREPSPLSIKLLGEPSRQSAFHANVPVGSSDLNNGKDNAIQAV* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0178 359 Gene3D - 113 164 - -
Gso15g0178 359 SUPERFAMILY Homeodomain-like 109 163 IPR009057 -
Gso15g0178 359 Pfam Myb-like DNA-binding domain 114 159 IPR001005 -
Gso15g0178 359 MobiDBLite consensus disorder prediction 1 25 - -
Gso15g0178 359 MobiDBLite consensus disorder prediction 61 97 - -
Gso15g0178 359 MobiDBLite consensus disorder prediction 177 211 - -
Gso15g0178 359 SMART sant 111 161 IPR001005 -
Gso15g0178 359 MobiDBLite consensus disorder prediction 1 18 - -
Gso15g0178 359 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 110 162 IPR006447 GO:0003677
Gso15g0178 359 MobiDBLite consensus disorder prediction 340 359 - -
Gso15g0178 359 CDD SANT 114 159 IPR001005 -
Gso15g0178 359 PANTHER TRANSCRIPTION FACTOR KUA1 1 353 - -
Gso15g0178 359 MobiDBLite consensus disorder prediction 61 79 - -
Gso15g0178 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 163 IPR017930 -
Gso15g0178 359 ProSiteProfiles SANT domain profile. 115 163 IPR017884 -
Gso15g0178 359 ProSiteProfiles Myb-like domain profile. 107 159 IPR001005 -
Gso15g0178 359 PANTHER OS01G0187900 PROTEIN 1 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0178 Gso-Chr15 1516426 1519605 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso15g0178 Myb_DNA-binding 8.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0178 - - gmx:778032 681.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0178 15 1516426 1519605 Gso11g3633 11 52019095 52022577 GST