Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0168 ATGACCGAAACAACAAGGTGTCACGAAACTCCTAGCAGCAGCACCAGCAACTCTTCCACTTCAAAACCCCCGAAACGGAACAAGACAGAAAAACAGAGCAAAGCAAAGAGAAACAGAGACCCCACCAAGCATCCCGATTACCACGGCGTTCGAATGCGCAATTGGGGCAAATGGGTATCAGAAATTCGCGAGCCGCGCAAGAAATCACGCATCTGGCTCGGAACTTTTGCCACCCCTGAAATGGCGGCACGTGCACACGACGTGGCGGCTTTGAGCATAAAAGGCCACACCGCGATTCTCAACTTCCCTAACATAGTAAACATGCTTCCCAGACCCGTCACGTGTGCCCCACGTGACATCCAAGCCGCGGCCGCGGAAGCCGCCGCGATGGTGGAGTTCGACCGTGAGGGTTCGGAGGCAGAGTCGTCGGAGCTGAGCGAGATTGTGGAGCTTCCGAACATAGAAGAGAGCTTCGAGTCGGTTGAGTCGAGAAGTGAGTTCACGTTGATCGACTCGGTAGATAGTTGGGTGTACCCTCCTCCAATGGCGGTGGGGAGCATTGGTGACATGATGATGCTTGGGGAACACGAGTGTGGATTATTCCAATTTGCGACCGATCACCAAAAAACATGTTCCGTTTAG 642 0.5358 MTETTRCHETPSSSTSNSSTSKPPKRNKTEKQSKAKRNRDPTKHPDYHGVRMRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALSIKGHTAILNFPNIVNMLPRPVTCAPRDIQAAAAEAAAMVEFDREGSEAESSELSEIVELPNIEESFESVESRSEFTLIDSVDSWVYPPPMAVGSIGDMMMLGEHECGLFQFATDHQKTCSV* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0168 213 Gene3D AP2/ERF domain 46 105 IPR036955 GO:0003700|GO:0006355
Gso15g0168 213 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 212 - -
Gso15g0168 213 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Gso15g0168 213 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Gso15g0168 213 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Gso15g0168 213 Pfam AP2 domain 45 96 IPR001471 GO:0003700|GO:0006355
Gso15g0168 213 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Gso15g0168 213 SUPERFAMILY DNA-binding domain 47 103 IPR016177 GO:0003677
Gso15g0168 213 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 4 212 - -
Gso15g0168 213 MobiDBLite consensus disorder prediction 1 49 - -
Gso15g0168 213 MobiDBLite consensus disorder prediction 1 23 - -
Gso15g0168 213 CDD AP2 45 104 IPR001471 GO:0003700|GO:0006355
Gso15g0168 213 MobiDBLite consensus disorder prediction 24 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0168 Gso-Chr15 1422362 1423467 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0168 17 186 AP2-EREBP Transcription Factor Family AT5G11590 52.284 2.39e-59 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso15g0168 AP2 7.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0168 K09286 - gmx:100787471 397.127