Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0119 ATGGATGTTACTTCCCTGGGTTCAAATAGCAATACCCAAACCGACCAACACCCTTTGTTGATGGAGCAGCCAGAAACCCATAATGGTCATCAGCATGTAATTGACATTACAAGGAATGGTGAAGCTCTAACTACGTCATCTCGTAATGATCAATACTCTGAAATGCATTTACCACAGAATGAAGATCAAGCAGCTGGGGATGCACAAAATTCCAGTCATCAAACATCATCATCTTCTGCACCCAGATTAAACTCTAGAAATTCAGCTTCATTGAGAAGAGGTGAGGGATATGGTCATCATGGAAGGAGTCCATTGAATTCTGGACTGTGGATTTCTGTTGAGCTTGTTGTCACTGTGAGTCAGATCATAGCATCTATCGTCGTTTTGTCATTGTCCAGGAATGAAAATCCCCAGGCCCCATTATTTGCATGGATTGTGGGCTATGCATCTGGTTGTGTTGCCACACTTCCCATTCTCTACTGGCGTTTTCGAAACCGTAATCAAAGCAATGAACAAGATACCTCTCAAGCATCTCAAGGATCTTCTGGAAGCAATCCTCCAGATCGTTCTTATAATTCCATCCATGTTTCTCATGTCTCAGATGAGGAGAATGGTCATGCTACACGATCAGCCTCAAGAAACACTATAATGCCTGGAGCCTTTACTTCTAGGCTTAATGGATTAGTAGACCATTTCAAGATGGCCCTGGATTGCTTCTTTGCAGTTTGGTTTGTAGTAGGAAATGTTTGGATCTTTGGAGGTCACACTTCTCCTTCTGATGCTCCACAATTGTATAGGTTATGTATTGTTTTTCTTACCTTTAGCTGTATCGGATATGCAATGCCATTTATACTTTGTGCAACTATTTGTTGCTGCCTACCTTGTATAATTTCTGTTTTGGGCATTCGAGAGGATTTTTCTCAGAATAGAGGAGCAACAGTAGAATCAATTAATGCGTTACCGATATTCAAGTTCAAATTGAAGAACAATGAAAATGGTGATGACCAGGATGTCAATGCAGCTATAGATGAAGGTGGAATTTTGGCTGCAGGGACAGAAAAGGAGCGAATGATTTCAGGAGAAGACGCTGTTTGTTGCATTTGCTTAGCAAAATATGCAGATGATGACGAGCTTAGAGAGTTACCTTGCTCTCACTTTTTCCACGTAATGTGTGTTGACAAATGGTTAAAGATAAATGCAACCTGCCCTCTTTGTAAAAACGAAGTTGGTACGAGTAATGGAGGGTCCCCTTCAGCCTGGAACTCCAGTACGTAG 1275 0.4149 MDVTSLGSNSNTQTDQHPLLMEQPETHNGHQHVIDITRNGEALTTSSRNDQYSEMHLPQNEDQAAGDAQNSSHQTSSSSAPRLNSRNSASLRRGEGYGHHGRSPLNSGLWISVELVVTVSQIIASIVVLSLSRNENPQAPLFAWIVGYASGCVATLPILYWRFRNRNQSNEQDTSQASQGSSGSNPPDRSYNSIHVSHVSDEENGHATRSASRNTIMPGAFTSRLNGLVDHFKMALDCFFAVWFVVGNVWIFGGHTSPSDAPQLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDFSQNRGATVESINALPIFKFKLKNNENGDDQDVNAAIDEGGILAAGTEKERMISGEDAVCCICLAKYADDDELRELPCSHFFHVMCVDKWLKINATCPLCKNEVGTSNGGSPSAWNSST* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0119 424 CDD RING-H2_RNF111_like 364 406 - -
Gso15g0119 424 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 420 - -
Gso15g0119 424 MobiDBLite consensus disorder prediction 60 91 - -
Gso15g0119 424 SUPERFAMILY RING/U-box 357 412 - -
Gso15g0119 424 MobiDBLite consensus disorder prediction 60 103 - -
Gso15g0119 424 PANTHER PROTEIN, PUTATIVE-RELATED 1 420 - -
Gso15g0119 424 SMART ringv_2 364 406 IPR011016 GO:0008270
Gso15g0119 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 348 414 IPR013083 -
Gso15g0119 424 ProSiteProfiles Zinc finger RING-type profile. 365 406 IPR001841 -
Gso15g0119 424 SMART ring_2 365 405 IPR001841 -
Gso15g0119 424 MobiDBLite consensus disorder prediction 170 193 - -
Gso15g0119 424 Pfam Ring finger domain 365 406 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0119 Gso-Chr15 1036120 1040262 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0119 1 416 C3H Transcription Factor Family AT1G80400 58.057 1.06e-171 485
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0119 - - gmx:100819729 857.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0119 15 1036120 1040262 Gso11g3685 11 52481333 52485873 GST