Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0114 ATGAGAGGGCTGAAAGAGCACCTTAAACTGGCAAGAGAATACGCGGTGGAAGGGCTCTACGACACCTCCGTGATCTTCTTCGACAACGCCGTTGCACAGATCAACAAGCACCTTAACAGCAACAGCGTGGAGGACCCTTTGGTGCGAGCCAAATGGATGAAGGTGAAGAAAGCGCTGTGCGAGGAAACGGAAGTGGTGAAGCAGCTAGATGCCGAGAGAAGGGCGTTTAAGGAAACAACACGATCGCCATCTCAATCCTCGTCCTTTGTTTTTCAACCCTTGGATAACTATCCCACTACCTCTCCTCCTCCTCCTCCTCCTCATGATCCCGACGTCTGGAGGCCGCCCAGTCCAGACGATGCCAGAAGGCCCACCAGGCCCACTGCTCGCAGCAAAGATGGGGCTTGGGCTGCCCGAGGTTCAGCCAGGCCCGCCCCTCGTGCCGCAAAGCCCAACAGCAGGGTCAGCACAGGAACAGGAAAGAAAGGAAAGGATAATAATAAGTATGAAGGCCCTGACGGTGAGTTGGCGGAAATGCTAGAAAGGGATGTGTTGGAAACGTCCCCTGCTGTCAGATGGGATGATGTTGCAGGCCTCACTCAAGCCAAAAGCCTTCTAGAAGAAGCCCTTGTACTTCCCTTATGGATGCCTGAATATTTCCAGGGAATAAGGAGACCCTGGAAAGGTGTTCTCATGTTTGGACCTCCAGGAACTGGGAAGACGCTTCTTGCTAAAGCAGTTGCTACTGAATGTGGTACCACTTTCTTCAACGTTTCTTCTGCTACTTTGGCTTCTAAATGGCGTGGAGAGAGCGAGCGCATGGTCCGGTGCTTGTTTGATCTTGCAAGAGCATATGCCCCCAGTACAATTTTCATTGATGAAATTGATTCTCTATGCAATGCTAGGGGGGCTTCTGGGGAGCATGAATCATCCAGAAGGGTGAAGTCTGAACTTCTAGTTCAGCTTGATGGTGTAAATAATAGTTCCACAAATGAAGATGGTACCCGCAAAATAGTAATGGTTTTGGCAGCCACTAACTTTCCATGGGACATAGATGAGGCACTGAGGAGAAGATTGGAAAAGCGTATATACATTCCTCTTCCAAATTTTGAGAGTCGAAAAGAGCTGATCCGTATCAATTTGAGGACTGTAGAGGTGTCCCCTGATGTGAACATAGATGAAGTGGCTCGAAGGACAGAGGGGTATAGTGGAGATGACTTGACAAATGTATGTCGTGATGCTTCTCTGAATGGTATGAGGCGTAAGATAGCCGGAAAAACGCGTGATGAGATCAAGAACATGTCCAAGGATGAGATTTCTAAGGACCCAGTTGCAATGTGTGATTTTGAAGCAGCTTTGAAGAAAGTCCAACCAAGTGTTTCTCAGGCTGACATTGAACGCCATGAGAAGTGGTATGCCGAATTTGGATCAGCATAA 1437 0.4878 MRGLKEHLKLAREYAVEGLYDTSVIFFDNAVAQINKHLNSNSVEDPLVRAKWMKVKKALCEETEVVKQLDAERRAFKETTRSPSQSSSFVFQPLDNYPTTSPPPPPPHDPDVWRPPSPDDARRPTRPTARSKDGAWAARGSARPAPRAAKPNSRVSTGTGKKGKDNNKYEGPDGELAEMLERDVLETSPAVRWDDVAGLTQAKSLLEEALVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQLDGVNNSSTNEDGTRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLRTVEVSPDVNIDEVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEAALKKVQPSVSQADIERHEKWYAEFGSA* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0114 478 MobiDBLite consensus disorder prediction 80 96 - -
Gso15g0114 478 Gene3D - 368 454 - -
Gso15g0114 478 Pfam Vps4 C terminal oligomerisation domain 431 476 IPR015415 -
Gso15g0114 478 MobiDBLite consensus disorder prediction 76 173 - -
Gso15g0114 478 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A1 3 478 - -
Gso15g0114 478 MobiDBLite consensus disorder prediction 97 112 - -
Gso15g0114 478 CDD AAA 224 367 - -
Gso15g0114 478 Gene3D - 1 77 - -
Gso15g0114 478 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 2 478 IPR028596 GO:0008017|GO:0008568|GO:0051013
Gso15g0114 478 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 475 IPR027417 -
Gso15g0114 478 ProSitePatterns AAA-protein family signature. 339 358 IPR003960 GO:0005524|GO:0016887
Gso15g0114 478 SMART AAA_5 226 369 IPR003593 -
Gso15g0114 478 Gene3D - 188 469 IPR027417 -
Gso15g0114 478 Pfam ATPase family associated with various cellular activities (AAA) 230 367 IPR003959 GO:0005524|GO:0016887
Gso15g0114 478 PANTHER AAA DOMAIN-CONTAINING 3 478 - -
Gso15g0114 478 Pfam AAA+ lid domain 389 430 IPR041569 -
Gso15g0114 478 MobiDBLite consensus disorder prediction 113 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0114 Gso-Chr15 981174 984616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0114 182 459 Calmodulin-binding Proteins AT3G56690 39.362 5.78e-52 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0114 K07767 - gmx:100801219 892.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0114 15 981174 984616 Gso8g1730 8 16926026 16930176 PCT
Gso8g1730 8 16926026 16930176 Gso15g0114 15 981174 984616 PCT