Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0057 ATGGATCGAGAATGGGGATCGAAGCCAGGGAGCGGAGGTGCGGCGTCGGCGCAGAACGAAGCCATAGACCGGCGAGAGCGTCTCCGGCGACTGGCTCTGGAGACCATAGACTTGGCGAAGGATCCCTATTTCATGCGCAACCACCTCGGAAGCTACGAATGCAAACTCTGTCTCACTCTCCACAACAACGAGGGTAACTACTTGGCCCACACTCAGGGCAAGCGCCACCAAACCAACTTGGCCAAACGTGCCGCTCGCGAGGCCAAGGACGCCCCCGCCCAGCCCCAACCCCACAAGCGCAAAGTCACTCTTCGAAAAACAGTGAAGATTGGACGCCCTGGGTATCGTGTGACCAAGCAGTATGACCCGGAGACAAAACAAAGATCTCTCCTATTCCAGATTGAATATCCGGAGATTGAAGACCTCATGAAGCCGAGGCACCGGTTTATGTCCTCCTATGAACAGAGGGTGCAACCCTTTGATAAAAGGTATCAGTACCTCTTGTTTGCTGCTGAACCATATGAAATCGTTGCTTTCAAGGTGCCCAGCACGGAGATTGACAAGTCCACTCCAAATTTCTTCTCGCACTGGGATCCTGACTCCAAGATGTTCACGCTACAATTGTATTTTAAATCCAAGCCGCCAGAGGCGAACAAACCGCAGCCTGCCTCTACTGCCAATGGCACAGCACCATCTGGTGTACCACCAAGGCCTTTGCCCCCACCACCCCAAGGTCCACTACCACCACCTCCACCTCCTCCACAAGGGCTACCTCCTGGTGCACCCATGGCAAATCCTCCTAGAGCTCCTCCACCTCCAATGCCGGGATCTATGCCACCTCCTCCTATGGCAGCAACTAACGGTCCTAGACCTGCACCTTCTGGTGGAATGCCATCTATTCCACCCCCACCCCCTGTTGCAAGTGGGACATCGGGTTTCAACATGGGTGCTAGACCTCCATCAATGCCACCTCCACAAGGTTTTCCTTCCCAACCCATGCAGGGCCATGGTGTCCGTCTTCCTCCTCCACCCCCAAACATGGGACAGTAG 1050 0.5505 MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPHKRKVTLRKTVKIGRPGYRVTKQYDPETKQRSLLFQIEYPEIEDLMKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIVAFKVPSTEIDKSTPNFFSHWDPDSKMFTLQLYFKSKPPEANKPQPASTANGTAPSGVPPRPLPPPPQGPLPPPPPPPQGLPPGAPMANPPRAPPPPMPGSMPPPPMAATNGPRPAPSGGMPSIPPPPPVASGTSGFNMGARPPSMPPPQGFPSQPMQGHGVRLPPPPPNMGQ* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0057 349 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 110 204 IPR031781 -
Gso15g0057 349 PRINTS Proline rich extensin signature 215 236 - -
Gso15g0057 349 PRINTS Proline rich extensin signature 236 252 - -
Gso15g0057 349 PRINTS Proline rich extensin signature 258 275 - -
Gso15g0057 349 PRINTS Proline rich extensin signature 282 307 - -
Gso15g0057 349 SUPERFAMILY beta-beta-alpha zinc fingers 48 82 IPR036236 -
Gso15g0057 349 SMART CactinC_cactus_3 89 217 - -
Gso15g0057 349 MobiDBLite consensus disorder prediction 233 308 - -
Gso15g0057 349 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676|GO:0008270
Gso15g0057 349 ProSiteProfiles Zinc finger matrin-type profile. 52 82 IPR000690 GO:0003676|GO:0005634|GO:0008270
Gso15g0057 349 MobiDBLite consensus disorder prediction 213 349 - -
Gso15g0057 349 Pfam Zinc-finger of C2H2 type 52 76 - -
Gso15g0057 349 MobiDBLite consensus disorder prediction 318 349 - -
Gso15g0057 349 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 342 - -
Gso15g0057 349 MobiDBLite consensus disorder prediction 1 21 - -
Gso15g0057 349 Gene3D Classic Zinc Finger 46 89 - -
Gso15g0057 349 Gene3D - 94 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0057 Gso-Chr15 503677 505934 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0057 1 228 C2H2 Transcription Factor Family AT2G32600 88.596 2.99e-143 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0057 K12826 - gmx:100818114 573.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0057 15 503677 505934 Gso11g3741 11 52984256 52986489 GST