Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0052 ATGTGGAGTTCAACTTCAAGCACAGCAGCGATTCCCTCCGACGAGGAACCTAGCGAATCCTCCTCCTCGTCCTCCTTCTCCTCCTCTCTCTTCAATTTCTCTTCTGGAAACCCGAGAATCGAGGAGACCCGTGGCCTCATGCATCTCTTCCCAGACGACACTCCTTCTACTCTACCCGTTGGACGGAAGCCTCTCGTTTGCGTTGTCGGCGTCCCAAATCACATGACCTATGCGGATTTCTGCCAGTTCTGTGGTTCCTTCATTCAGCACATGCTAGAGATGCGCATAGTCAGGATGGATGGGATGGAGGATCAGTACAGTGTTTTAGTTCGCTTTGACGATCAAGACTCCACCGACAGCTTCTACAAGCACTACAATGGCCGCCGTTTCTCTTCTCTCGAGGTTGAGGTTTGCCGTGTTCTTTTCACATTAGACGTGCAGTACACTGGCTCCATTGAACATGCACAACCCTCCAATGCTACTTCAACTGAACTGCCTACTTGTCCTGTTTGCCTTGAGCGATTAGATCAGGACACCGGTGGAATTCTTACAACTATATGCAACCATTCTTTCCATTGTTCCTGTATTTCTAAATGGGCAGATTCTTCTTGTCCTGTATGCCGCTATTGCCAGCAGCAAGCTGAAAAATCTATATGTTTTGTTTGTCAAACCACTGAGAACCTATGGATATGTGTTATATGTGGGTATGTTGGCTGTGGAAGATACAAGGGAGGGCATGCTATAATACACTGGAAAGAGACACAGCATTGCTATTCCCTAGAAGTGGAAACAAAACGAGTTTGGGATTATGTGGGAGACAACTATGTTCATAGACTTATTCAGTCCAAAACTGATGGGAAGTTGATTGAGCTGAACACTCAGTGTGCGCATGCAGACAATGGATGTGGAAGTTGCAGCTGTGAAGATAATGCCATGAATGAGGCTATACTTAATAGTAAAGTTGAAGCTATTGTCAATGAGTACAATGAATTGCTTGCTACTCAACTTGAAAACCAAAAATTATATTTTGAATCCTTATTACAAGAAGTAAAAGAAGAATCTGAGAGAAAAATTTCCAAAGCTGTTCAGAAGGCTATCAGTCTTAAACAGCAGAAGATTCAGTCCAAGATTGACAGATGTAAGAAAGAGAAGAAATTTCTGGATGATCTTAATGAGAATCTTGTGAAAAATGAGGACATTTGGAAAACTAAGATACTTGCGATTGAAGAGAGGGAGAAAAAAACCACGAGACTGATGGATGATAGAGTAGCGGACCTGGAAATGCAGCTTGGTGATCTCATGGTTTGTCTTGAGGGTGGGAGGACGGTAGAACAGCTGGCAGCTTCAGATGAGATTAAAGAAGGGATTATCGACAAATCAATAGAATCCTCGACAACTAGTGGCTCTGACCTGGTGGGAAGAGACGCATAA 1431 0.4382 MWSSTSSTAAIPSDEEPSESSSSSSFSSSLFNFSSGNPRIEETRGLMHLFPDDTPSTLPVGRKPLVCVVGVPNHMTYADFCQFCGSFIQHMLEMRIVRMDGMEDQYSVLVRFDDQDSTDSFYKHYNGRRFSSLEVEVCRVLFTLDVQYTGSIEHAQPSNATSTELPTCPVCLERLDQDTGGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICFVCQTTENLWICVICGYVGCGRYKGGHAIIHWKETQHCYSLEVETKRVWDYVGDNYVHRLIQSKTDGKLIELNTQCAHADNGCGSCSCEDNAMNEAILNSKVEAIVNEYNELLATQLENQKLYFESLLQEVKEESERKISKAVQKAISLKQQKIQSKIDRCKKEKKFLDDLNENLVKNEDIWKTKILAIEEREKKTTRLMDDRVADLEMQLGDLMVCLEGGRTVEQLAASDEIKEGIIDKSIESSTTSGSDLVGRDA* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0052 476 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 210 IPR013083 -
Gso15g0052 476 PANTHER BRCA1-ASSOCIATED PROTEIN 13 459 - -
Gso15g0052 476 ProSiteProfiles Zinc finger UBP-type profile. 202 295 IPR001607 GO:0008270
Gso15g0052 476 CDD RING-H2_BRAP2 166 209 - -
Gso15g0052 476 CDD RRM_BRAP2_like 66 147 - -
Gso15g0052 476 Coils Coil 377 397 - -
Gso15g0052 476 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 211 290 IPR013083 -
Gso15g0052 476 Pfam BRCA1-associated protein 2 59 155 IPR011422 -
Gso15g0052 476 ProSiteProfiles Zinc finger RING-type profile. 168 208 IPR001841 -
Gso15g0052 476 SMART ring_2 168 207 IPR001841 -
Gso15g0052 476 Pfam Zn-finger in ubiquitin-hydrolases and other protein 219 278 IPR001607 GO:0008270
Gso15g0052 476 MobiDBLite consensus disorder prediction 1 27 - -
Gso15g0052 476 Pfam Ring finger domain 167 208 IPR001841 -
Gso15g0052 476 SUPERFAMILY RING/U-box 184 283 - -
Gso15g0052 476 Coils Coil 333 371 - -
Gso15g0052 476 SMART Zf_UBP_1 218 267 IPR001607 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0052 Gso-Chr15 463097 466340 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0052 168 208 C3H Transcription Factor Family AT1G72220 48.837 1.07e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0052 K10632 - gmx:100794688 937.947