Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0049 ATGGAGGAGAATCCATGGGGGAGTTGGTCTTCCGATATGGAAGTGGATGACGAGGTTGCGAATGAAAGTTTGTGCCACACGAACCTTTTTGATGAAGAGTTCCTAAGAGATATTCTGCAACGGCCACAAGAGGGTGCTCCAAATCTTAACAACTCATCCATCATGTCGTCTCTTTGTGCTCAAGACATTAAGCCAACTACCTTATTTCCAACCACTTACATACTCTCTTTCGACAATTCCGCTGCATTGTTACCAACAGAAACTGATCGTGATTCTTCTTCTTCCAAATTGCCCTCATCAAATTCAAGGGCCAACCATGGAATCAAGAAGCCTGGAAGCGCTTCGGAGTCACTGAATCACATCATGTCAGAGAGAAATAGGAGGCAGGAGCTCACCAGCAAATTCATTGCACTTGCTGCCACTATCCCTGGCTTGAAGAAGATGGACAAGGCCCATGTACTAAGAGAAGCTATCAATTACGTGAAACAACTACAAGAACGTGTAGAAGAGTTAGAAGAAGATATCCAGAAGAACGGTGTAGAATCAGAGATAACCATAACAAGATCTCATCTCTGCATTGATGATGGCACGAACACTGACGAATGCTATGGGCCCAATGAAGCACTTCCTGAAGTTGAAGCCAGAGTCTTAGGGAAGGAAGTGTTAATCAAAATTCACTGTGGCAAACATTATGGAATTCTGCTTGAAGTAATGTCTGAGCTCGAACGTCTTCATCTCTACATATCCGCTAGCAATGTCTTGCCTTTTGGGAATACCCTTGATATCACCATTATTGCTCAGATGGGTGACAAATACAACTTGGTAGCGAAGGATCTAGTGAAAGAACTGAGACAAGTGGCTATGATGAAGTCATGTTATGTGCAACAATGA 891 0.4321 MEENPWGSWSSDMEVDDEVANESLCHTNLFDEEFLRDILQRPQEGAPNLNNSSIMSSLCAQDIKPTTLFPTTYILSFDNSAALLPTETDRDSSSSKLPSSNSRANHGIKKPGSASESLNHIMSERNRRQELTSKFIALAATIPGLKKMDKAHVLREAINYVKQLQERVEELEEDIQKNGVESEITITRSHLCIDDGTNTDECYGPNEALPEVEARVLGKEVLIKIHCGKHYGILLEVMSELERLHLYISASNVLPFGNTLDITIIAQMGDKYNLVAKDLVKELRQVAMMKSCYVQQ* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0049 296 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 115 164 IPR011598 GO:0046983
Gso15g0049 296 PANTHER BHLH TRANSCRIPTION FACTOR 21 294 - -
Gso15g0049 296 MobiDBLite consensus disorder prediction 85 108 - -
Gso15g0049 296 Pfam Helix-loop-helix DNA-binding domain 119 165 IPR011598 GO:0046983
Gso15g0049 296 Gene3D - 109 179 IPR036638 GO:0046983
Gso15g0049 296 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 118 181 IPR036638 GO:0046983
Gso15g0049 296 SMART finulus 121 170 IPR011598 GO:0046983
Gso15g0049 296 Coils Coil 154 181 - -
Gso15g0049 296 MobiDBLite consensus disorder prediction 85 116 - -
Gso15g0049 296 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 21 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0049 Gso-Chr15 451910 457174 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0049 115 284 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 45.977 3.03e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso15g0049 HLH 9.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0049 - - gmx:100809223 582.022