Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0048 ATGTGTATCCTAAATTTGATATTTTGCTTTGTAATATATAATCTTCTATTCTATAGGATATGGGCGGCGACAACTCCTTCTTCAGTGAAGAGCATCGAAATCCAACCTTGTACTGTGTTGCAAATGAAACAAGAAACCAGCTGCGAAGGAGCAAAGACACCGACACGGGATCACATTATGTCCGAGAGAAAAAGGAGACAGCTAATGGCAGAGATATTCATAGCGCTTTCAGCTATTATACCTGGCTCGAACAAGATAGACAAGTCCTCCGTACTCAGTGAAGCTATTAATTACGTGAAACAACTTAAAGGACGCATAGCTGTGCTGGAGCGAGTGAGAAGAGAAGTACCACCGACAAGTCGATGA 366 0.4208 MCILNLIFCFVIYNLLFYRIWAATTPSSVKSIEIQPCTVLQMKQETSCEGAKTPTRDHIMSERKRRQLMAEIFIALSAIIPGSNKIDKSSVLSEAINYVKQLKGRIAVLERVRREVPPTSR* 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0048 121 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 57 116 IPR036638 GO:0046983
Gso15g0048 121 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 39 112 - -
Gso15g0048 121 Pfam Helix-loop-helix DNA-binding domain 58 103 IPR011598 GO:0046983
Gso15g0048 121 SMART finulus 59 108 IPR011598 GO:0046983
Gso15g0048 121 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 53 102 IPR011598 GO:0046983
Gso15g0048 121 PANTHER BHLH TRANSCRIPTION FACTOR 39 112 - -
Gso15g0048 121 Gene3D - 50 115 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0048 Gso-Chr15 445043 447156 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0048 52 115 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 43.750 5.55e-15 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso15g0048 HLH 1.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0048 - - gsj:114386662 239.58