Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0047 ATGGAGCAATCATATTCATGGGAGAATTGGGCTCTTGACAAGGAAATGGGGGAGGATGAGGAGGAGTTCCTTCGCGACATCCTTAGTAAACCGGCTTTTTCTTCCGAGAGTGAAAGTCAAGCACCAGTTGTCTCATGCTCTGCCAAAAGCAAAAGGGCTCCGATGACATACATTTTGTCTTTTGATAACTCCACCATAACACCAGCACCTTCTTCCCCCCCCACCCTAGAGGCCCAACCTGGAAAGAGGGCTAAAAGAGCTTCCCACATTATGGCTGAAAGAAAAAGGAGACAGCAACTCACCCAGAGCTTCATTGCACTTTCAGCCACCATCCCTGGCTTGAACAAGAAGGACAAGAGTTCTATGCTTGGCAAAGCAATTGATTACGTGAAACAACTTCAAGAACGCGTGACGGAGCTTGAACAGAGAAAGAAGAGAGGCAAAGAATCGATGATAATCCTCAAGAAGAGTGAAGCAAATTCTGAGGATTGCTGTAGAGCCAACAAAATGCTCCCTGATGTTGAAGCAAGAGTGACGGAGAATGAGGTACTCATTGAGATCCATTGCGAGAAGGAAGATGGGCTTGAGCTGATCAAAATATTGGACCACCTTGAAAATCTTCATCTCTGTGTCACCGCCAGCAGCGTATTGCCCTTTCGGAATTCAACTCTTAGCATCACTATTATCGCTCAGGTATAG 699 0.4607 MEQSYSWENWALDKEMGEDEEEFLRDILSKPAFSSESESQAPVVSCSAKSKRAPMTYILSFDNSTITPAPSSPPTLEAQPGKRAKRASHIMAERKRRQQLTQSFIALSATIPGLNKKDKSSMLGKAIDYVKQLQERVTELEQRKKRGKESMIILKKSEANSEDCCRANKMLPDVEARVTENEVLIEIHCEKEDGLELIKILDHLENLHLCVTASSVLPFRNSTLSITIIAQV* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0047 232 PANTHER BHLH TRANSCRIPTION FACTOR 6 74 - -
Gso15g0047 232 PANTHER BHLH TRANSCRIPTION FACTOR 76 231 - -
Gso15g0047 232 Coils Coil 123 150 - -
Gso15g0047 232 SMART finulus 90 139 IPR011598 GO:0046983
Gso15g0047 232 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 82 154 IPR036638 GO:0046983
Gso15g0047 232 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 84 133 IPR011598 GO:0046983
Gso15g0047 232 MobiDBLite consensus disorder prediction 64 86 - -
Gso15g0047 232 Pfam Helix-loop-helix DNA-binding domain 85 134 IPR011598 GO:0046983
Gso15g0047 232 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 6 74 - -
Gso15g0047 232 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 76 231 - -
Gso15g0047 232 Gene3D - 78 149 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0047 Gso-Chr15 439038 443636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0047 75 231 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 48.235 1.13e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso15g0047 HLH 1.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0047 - - gmx:100794354 444.891