Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0041 ATGGCTAGACCCCAACAACGCTATCGAGGTGTCCGCCAGAGGCACTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTCTTTTGAAGACTAGAATATGGCTAGGAACGTTTGAAACGGCAGAGGATGCAGCTAGAGCGTACGATGAAGCAGCAAGGTTGATGTGTGGGCCAAAAGCGCGCACCAATTTCCCTTACAATCCCAATGAGCCACAGTCATCTTCATCGAAGCTCCTCTCTGCTACTCTGACTGCGAAGCTACACAAGTGTCACATGGCCTCTCTTTCCCTTCAAATGAGCAAGCAGAAACAATCTCAGAAAGAGCCTCATCAAGGATCATCCAACGACTCAGGCAATTCCATTGCGGGAACAAGTTCAGATAACACCCAGTTTAGATGGCCAGAAGAGGAAGGACAAGTTGAACTGCTAGAACAACAGCAACAATTTCAGCCAGTTCTTCAAGATGATCACATTGAACAGATGATACAGGAGCTTCTTGATTATGGCTCAATGGAGATTAGTTTTGTTCACTCAGCCTAA 537 0.473 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPNEPQSSSSKLLSATLTAKLHKCHMASLSLQMSKQKQSQKEPHQGSSNDSGNSIAGTSSDNTQFRWPEEEGQVELLEQQQQFQPVLQDDHIEQMIQELLDYGSMEISFVHSA* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0041 178 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Gso15g0041 178 MobiDBLite consensus disorder prediction 96 129 - -
Gso15g0041 178 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Gso15g0041 178 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Gso15g0041 178 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Gso15g0041 178 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 174 - -
Gso15g0041 178 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Gso15g0041 178 PANTHER ETHYLENE RESPONSE FACTOR 1 174 - -
Gso15g0041 178 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Gso15g0041 178 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Gso15g0041 178 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0041 Gso-Chr15 384987 385968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0041 1 175 AP2-EREBP Transcription Factor Family AT5G25190 65.746 1.46e-77 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso15g0041 AP2 7.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0041 - - gmx:100805499 310.842