Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0040 ATGGACCTTATATTGTCAGAGTCACGTCCATCAGAAAATCTGAGCATTCCATTTTTAGAGACTCCACGTCCATGCTCAAAGCCGCAAGTACCTTCCATGGATACCCAGAAGGAGAAGAAGGAGGAGGACAAAGAACAACCCCATGAGTCTGCTCCACACCTTGCACTACTGGATCTAAGTCTCCCTAGTAAAGATTCAGGCGGTGATGATGATGAGTCAAAGCCACTCAACCTCATCAACTGTATCGATACAAATTTGTCCATGAACTCCTCAGAATCTAGTCATGGACATGGTGATGAATTGGAGCCCCGGATATTCTCATGCAACTACTGCCAAAGGAAGTTTTATAGCTCGCAGGCACTTGGGGGACACCAGAATGCGCATAAGCGTGAAAGAACATTGGCCAAAAGAGGACACAAAGCTGGTGCTGCAGTTTCCATAGATTTTGCACGGAGGTACTCCAACATCAGCATGGCTTCTCTGCCTTTGCATGGTTCCTACAACAGGTCACTTGGCATTCAGGCGCATTCTATGATCAACAAACCCTCTTATCAAACACAAACACCCTTTTCTGGTTTGTCCCGTTCTCATGCTCAGAAGCGGCTTATGTTCTCACAACCGCCAATTGGGGCAGAAAGTGAATCATCTTTGACTGGTGGCATCCCAGTCCCACGGTTAGGGAAGTTTTCTCCAAGGCTGGTGCCAGAGGGATTTGGAGGTTACTGGTTGGATAGTATTAACCATTTGAAGACTAAACAAGAGGATCAGTTGCACAAGCTTGACTTGTCCCTCAAACTCTAA 801 0.4644 MDLILSESRPSENLSIPFLETPRPCSKPQVPSMDTQKEKKEEDKEQPHESAPHLALLDLSLPSKDSGGDDDESKPLNLINCIDTNLSMNSSESSHGHGDELEPRIFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGHKAGAAVSIDFARRYSNISMASLPLHGSYNRSLGIQAHSMINKPSYQTQTPFSGLSRSHAQKRLMFSQPPIGAESESSLTGGIPVPRLGKFSPRLVPEGFGGYWLDSINHLKTKQEDQLHKLDLSLKL* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0040 266 MobiDBLite consensus disorder prediction 33 51 - -
Gso15g0040 266 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Gso15g0040 266 PANTHER ZINC FINGER PROTEIN 1 1 266 - -
Gso15g0040 266 PANTHER ZINC FINGER PROTEIN JAGGED 1 266 IPR045320 GO:0003700
Gso15g0040 266 Gene3D Classic Zinc Finger 84 153 - -
Gso15g0040 266 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Gso15g0040 266 MobiDBLite consensus disorder prediction 1 76 - -
Gso15g0040 266 SUPERFAMILY beta-beta-alpha zinc fingers 103 133 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0040 Gso-Chr15 370770 372100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g0040 102 266 C2H2 Transcription Factor Family AT1G80730 47.458 1.18e-36 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso15g0040 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0040 - - gmx:100809585 520.776